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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgaaactgcagcttgcagatgcagcggttgtctgtcaaggcaagattgggctgcagtgtagagtctaactaatccttacttggctctactgttgtagATCTTGTCCACCGGGCTTGGCAGAATCGTTCCAAATTTGATATCCAGGAAGCACACTAACAGCGCAGCAACTG

Basic information

species Oryza sativa
transcript LOC_Os08g41670.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g41670.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM5G872373_T01 (Zea mays), 3'ss of exon 4
gtaggtgaaactgcagcttgcagat----gcagcggttgtctgtcaaggcaagattgggctgc-agtgtag---agtctaactaatccttacttggctctac--tgttg------tagATCTTGTCCACCGGGCTTGGCAGAATCGTTCCAAATTTGATATCCAGGAAGCACACTAACAGCGCAGCAACTG---------------------------
|||||| | |        || || |    |||||  |  |  |   | | || |    ||||| |||       ||| | ||| ||||||   || |||     |||||      ||| |  |||| || || || ||||| || ||||| ||||||||||| |||||||||||||||||||| || || |                           
gtaggttacatgctccactgaagcttttggcagctctgtttgggggaagaaaaacgaagctgctagtacttgctagtatgactgatccttctgtgcctccgtggtgttgcattcttagGTGCTGTCTACTGGACTAGGCAGGATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAGGTATGGCTTATCTGAATGTCACCTTAT

upper sequence: LOC_Os08g41670.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM5G872373_T02 (Zea mays), 3'ss of exon 4
gtaggtgaaactgcagcttgcagat----gcagcggttgtctgtcaaggcaagattgggctgc-agtgtag---agtctaactaatccttacttggctctac--tgttg------tagATCTTGTCCACCGGGCTTGGCAGAATCGTTCCAAATTTGATATCCAGGAAGCACACTAACAGCGCAGCAACTG
|||||| | |        || || |    |||||  |  |  |   | | || |    ||||| |||       ||| | ||| ||||||   || |||     |||||      ||| |  |||| || || || ||||| || ||||| ||||||||||| |||||||||||||||||||| || || |
gtaggttacatgctccactgaagcttttggcagctctgtttgggggaagaaaaacgaagctgctagtacttgctagtatgactgatccttctgtgcctccgtggtgttgcattcttagGTGCTGTCTACTGGACTAGGCAGGATTGTTCCGAATTTGATATCGAGGAAGCACACTAACAGCGCGGCGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattgggctgcagtgtagagtctaactaatccttacttggctctactgttgtagATCTTGTCCACCGGGCTTGGCAGAATCGTTCCAAATTTGATATCCAGGAAGCACACTAACAGCGCAGCAACTG
                              tccttac  putative branch site (score: 2)
                                         ctctact  putative PPT
                       taactaat  TA-rich tract