1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctctgtaaagcacacaagagatccttgtatcttgctgttctagttcaattaaactactgcggattcagtcttatatctatcttgcttgattttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCTTTGGATGTGAAAGTCTAACTGCCGTGAGTGTTTCGGAGTTGCTGTCAC
species | Oryza sativa |
transcript | LOC_Os08g39310.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAG GATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCEST: gi|87026983|gb|CI259636.1|CI259636
genomic: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAGgttagtgatt ... tttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
EST: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAG GATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCEST: gi|29643027|gb|CB648034.1|CB648034
genomic: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAGgttagtgatt ... tttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
EST: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAG GATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCEST: gi|29619019|gb|CB624031.1|CB624031
genomic: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAGgttagtgatt ... tttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
EST: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAG GATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCEST: gi|29682543|gb|CB678818.1|CB678818
genomic: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAGgttagtgatt ... tttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
EST: CTGAGGCTGTTAAACGTGTTTGGGACCACATCAAAAGCAATAATTTAGAG GATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCEST: gi|29667306|gb|CB663581.1|CB663581
genomic: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAGgttagtgatt ... tttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
EST: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAG GATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCEST: gi|29657921|gb|CB654196.1|CB654196
genomic: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAGgttagtgatt ... tttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
EST: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAG GATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCEST: gi|29619017|gb|CB624029.1|CB624029
genomic: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAGgttagtgatt ... tttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
EST: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAG GATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
genomic: CTGAGGCTGTTAAGCGTGTTTGGGACCACATCAAAAGCAATAATTTAGAGgttagtgatt ... tttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTC
caattaaactactgcggattcagtcttatatctatcttgcttgattttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCTTTGGATGTGAAAGTCTAACTGCCGTGAGTGTTTCGGAGTTGCTGTCAC
gcttgat putative branch site (score: 26)
ttttgtt CT-rich tract
ttatatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctgtaaagcacacaagagatccttgtatcttgctgttctagttcaattaaactactgcggattcagtcttatatctatcttgcttgattttgttgcagGATCCAGCAAATCCCACCATGATATTGTGCGACTCAAAACTTAAACAACTCTTTGGATGTGAAAGTCTAACTGCCGTGAGTGTTTCGGAGTTGCTGTCAC
- - - - - cacacaa
- - - - - - - - - - - -cttgtat
- - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -ctactgc