1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtctctgcagcttcgtataattagtggaattttggagaagaaagtgactatatatgttgatgactgattaatcttaatgtcatggttttgatttatgcagGCACAACCTTCTCCTACCACTGGCAAACTGCCATTTTTGATGCATAGTAATGTTAAACCATCGATCCCTAAAAAAACTGAAGATGAAACACGCCATGATC
species | Oryza sativa |
transcript | LOC_Os08g38990.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAGTCCAAGGGAACTTCTTGAGTCGCCGGTTTTTCTTCCGAACGCCATT GCACAACCTTCTCCTACCACTGGCAAACTGCCATTTTTGATGCATAGTAATEST: gi|29629747|gb|CB634756.1|CB634756
genomic: TGAGTCCAAGGGAACTTCTTGAGTCGCCGGTTTTTCTTCCGAACGCCATTgtaagtgact ... atttatgcagGCACAACCTTCTCCTACCACTGGCAAACTGCCATTTTTGATGCATAGTAAT
EST: TGAGTCCAAGGGAACTTCTTGAGTCGCCGGTTTTTCTTCCGAACGCCATT GCACAACCTTCTCCTACCACTGGCAAACTGCCATTTTTGATGCATAGTAAT
genomic: TGAGTCCAAGGGAACTTCTTGAGTCGCCGGTTTTTCTTCCGAACGCCATTgtaagtgact ... atttatgcagGCACAACCTTCTCCTACCACTGGCAAACTGCCATTTTTGATGCATAGTAAT
gactatatatgttgatgactgattaatcttaatgtcatggttttgatttatgcagGCACAACCTTCTCCTACCACTGGCAAACTGCCATTTTTGATGCATAGTAATGTTAAACCATCGATCCCTAAAAAAACTGAAGATGAAACACGCCATGATC
tgattaatcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctctgcagcttcgtataattagtggaattttggagaagaaagtgactatatatgttgatgactgattaatcttaatgtcatggttttgatttatgcagGCACAACCTTCTCCTACCACTGGCAAACTGCCATTTTTGATGCATAGTAATGTTAAACCATCGATCCCTAAAAAAACTGAAGATGAAACACGCCATGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ctgcagc
- - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcatg