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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgacatgatcatccacagggaatgactgcaatttcacctgacaaagcacaacgcaaacactgatattcggttttcactttccatctctgcagTTTCTGTCGATGAAGCTCTCGGCAGTCAACCCAAGAATCGATCTCGACATTGAATCACTTGTCAACAATTCCAAGGAT

Basic information

species Oryza sativa
transcript LOC_Os08g38080.1
intron # 4
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacaaagcacaacgcaaacactgatattcggttttcactttccatctctgcagTTTCTGTCGATGAAGCTCTCGGCAGTCAACCCAAGAATCGATCTCGACATTGAATCACTTGTCAACAATTCCAAGGAT
                    cactgat  putative branch site (score: 3)
                                 ttttcactttccatct  putative PPT
                       tgatatt  TA-rich tract