1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...caaatatgtaatcagttaatcaccttgatttaacctgaagtagaacaaaacatttaaattcttcagtaatgttagtctcatgttcagattcttccaccagCTCCCTTTCTTATGTGGCCTGCCTTTCCTGGAAAGAAGAGCTTCGGAAACTGCACATTTGCTTGTTGGGAGAACAGGAAAGCATTTATTCCTTACAGACA
species | Oryza sativa |
transcript | LOC_Os08g34750.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTTATAACCTTTGCCTCACCGCATCTTGGTTCAAGTGGAAACAAACAG CTCCCTTTCTTATGTGGCCTGCCTTTCCTGAAAAGAAGAGCTTCGGAAACTEST: gi|27577773|gb|CB000468.1|CB000468
genomic: ATTTTATAACCTTTGCCTCACCGCATCTTGGTTCAAGTGGAAATAAACAGgtaagactaa ... cttccaccagCTCCCTTTCTTATGTGGCCTGCCTTTCCTGGAAAGAAGAGCTTCGGAAACT
EST: ATTTTATAACCTTTGCCTCACCGCATCTTGGTTCAAGTGGAAATAAACAG CTCCCTTTCTTATGTGGCCTGCCTTTCCTGGAAAGAAGAGCTTCGGAAACTEST: gi|27576057|gb|CA998751.1|CA998751
genomic: ATTTTATAACCTTTGCCTCACCGCATCTTGGTTCAAGTGGAAATAAACAGgtaagactaa ... cttccaccagCTCCCTTTCTTATGTGGCCTGCCTTTCCTGGAAAGAAGAGCTTCGGAAACT
EST: ATTTTATAACCTTTGCCTCACCGCATCTTGGTTCAAGTGGAAATAAACAG CTCCCTTTCTTATGTGGCCTGCCTTTCCTGGAAAGAAGAGCTTCGGAAACT
genomic: ATTTTATAACCTTTGCCTCACCGCATCTTGGTTCAAGTGGAAATAAACAGgtaagactaa ... cttccaccagCTCCCTTTCTTATGTGGCCTGCCTTTCCTGGAAAGAAGAGCTTCGGAAACT
caaaacatttaaattcttcagtaatgttagtctcatgttcagattcttccaccagCTCCCTTTCTTATGTGGCCTGCCTTTCCTGGAAAGAAGAGCTTCGGAAACTGCACATTTGCTTGTTGGGAGAACAGGAAAGCATTTATTCCTTACAGACA
ttcttccacc CT-rich tract
atttaaattcttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatatgtaatcagttaatcaccttgatttaacctgaagtagaacaaaacatttaaattcttcagtaatgttagtctcatgttcagattcttccaccagCTCCCTTTCTTATGTGGCCTGCCTTTCCTGGAAAGAAGAGCTTCGGAAACTGCACATTTGCTTGTTGGGAGAACAGGAAAGCATTTATTCCTTACAGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- -atatgta
- - - - - - - - - - - - - - - - -cctgaag
- - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttc