1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggttcctttctatgtccatgggatacacttacctaccctgtaaaacaactagcagtgcaattctttggtctttctacttaagatttgatttgttatgcagTGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAAGGGGATTTTCGCCCATGGAGGGAGCAGTTAAACTTCCTGCCAGTGTTCT
species | Oryza sativa |
transcript | LOC_Os08g33850.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAA TGGCAACACATTTAATTTCTCAAGCTAAGTACAGEST: gi|568839|gb|D39688.1|D39688
genomic: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAAgtaagttgat ... tgttatgcagTGGCAACACATTTAATTTCTCAAGCTAAGTACAG
EST: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAA TGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAAEST: gi|66923290|gb|CX110138.1|CX110138
genomic: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAAgtaagttgat ... tgttatgcagTGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAA
EST: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAA TGGCAACACATTTAATTTTCTCAAGEST: gi|58691243|gb|CK079930.1|CK079930
genomic: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAAgtaagttgat ... tgttatgcagTGGCAACACATTTAATTT-CTCAAG
EST: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAA TGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAAEST: gi|58691215|gb|CK079902.1|CK079902
genomic: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAAgtaagttgat ... tgttatgcagTGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAA
EST: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAA TGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAA
genomic: TGCGTACGAATCACTCCATGACATGCTGAGCACACCTGGGCATAAATCAAgtaagttgat ... tgttatgcagTGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAA
caactagcagtgcaattctttggtctttctacttaagatttgatttgttatgcagTGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAAGGGGATTTTCGCCCATGGAGGGAGCAGTTAAACTTCCTGCCAGTGTTCT
atttgat putative branch site (score: 23)
ttaagatttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttcctttctatgtccatgggatacacttacctaccctgtaaaacaactagcagtgcaattctttggtctttctacttaagatttgatttgttatgcagTGGCAACACATTTAATTTCTCAAGCTAAGTACAGAGATCCTTGCACTCCAAGGGGATTTTCGCCCATGGAGGGAGCAGTTAAACTTCCTGCCAGTGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - -gtccatg
- - - - - - - - - - -gatacac
- - - - - - - - - - - - - - - - - -ccctgta
- - - - - - - - - - - - - - - - - - - - - -aacaact
- - - - - - - - - - - - - - - - - - - - - - - - - - cagtgca