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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcacttcattttataactattattattatgcgctacaaacctccgatgcagcattactgaaatgtcaagtcatgcagATATTTACTTCCTGAACATGTCCCCACCTGTCACCTGCGCATAACCTTTTCTGCGCACAAGGATTTGAATATCAAGTTTCAATCACATCGTAGCAG

Basic information

species Oryza sativa
transcript LOC_Os08g33830.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g33830.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G178169_T01 (Zea mays), 3'ss of exon 4
gta--gcacttcattttataacta-ttattattatgcgctac-aaacctccgatgcagcattactga---aatgtcaagtcatgcagATATTTACTTCCTGAACATGTCCCCACCTGTCACCTGCGCATAACCTTTTCTGCGCACAAGGATTTGAATATCAAGTTTCAATCACATCGTAGCAG
|||  ||| || |   | | |||| ||  || | ||   ||| |   |||| ||     |||||| |   ||  |     | | ||||||||||||||| |||||| ||    |||| ||| ||||||||||||| ||||| || ||||||||||||||||| ||||| || ||||| |||||
gtaatgcattttacgattttactaattgctactgtggattaccaggtctccaatatgaaattacttatgcaacttactccctttcagATATTTACTTCCAGAACATATCAGTGCCTGCCACATGCGCATAACCTTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG

upper sequence: LOC_Os08g33830.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G082174_T05 (Zea mays), 3'ss of exon 2
gtagcacttcattttataactattattattatgcgctacaaacctccgatgcagcattactgaaatgtcaagtcatgcagATATTTACTTCCTGAACATGTCCCCACCTGTCACCTGCGCATAACCTTTTCTGCGCACAAGGATTTGAATATCAAGTTTCAATCACATCGTAGCAG
   | | | ||||||| || |    ||  ||   ||||         |||||  ||   ||||  | ||   || | ||||||||||||||| |||||| ||    |||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| |||||
---gtaatgcattttacaaat----ttgctaattgctat----tgtggatgc--caggcctgacttctc---tctttcagATATTTACTTCCAGAACATATCGGTGCCTGCCACATGCGCATAACCTTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAG