1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggtgacttattccatggatcatcttgtactttgtcttggtgtcaaactaagaaggttttatcatcaaactaatttccatttgtttcatctcaaatatcagATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATG
species | Oryza sativa |
transcript | LOC_Os08g25700.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGAAGATTGGCAGGAATTCATTCGATACTTTCGGGAAAGCAAGTTG ATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTT
genomic: GTGGTGAAGATTGGCAGGAATTCATTCGATACTTTCGGGAAAGCAAGTTGgtaagtactc ... caaatatcagATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTT
actaagaaggttttatcatcaaactaatttccatttgtttcatctcaaatatcagATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATG
aactaat putative branch site (score: 13)
tttcatctc putative PPT
aaactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgacttattccatggatcatcttgtactttgtcttggtgtcaaactaagaaggttttatcatcaaactaatttccatttgtttcatctcaaatatcagATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - -ttccatg
- - - - - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcaaa