1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...gatatcgttattggattccatgattatgccatgttttctttgtaacgtaattggaatcatctatctgctaactcttggtttttaacccaacatggtgcagGAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAAATGTTCGCAGAAAATAAATTTAAG
species | Oryza sativa |
transcript | LOC_Os08g19850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGACGCATTTTGGTATCATTGATGCCCAAGCGCAGAAAGCTGTTGCG GAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAAEST: gi|58666316|gb|CK055002.1|CK055002
genomic: ATGAGACACATTTTGGTATCATTGATGCCCAAGCACAGAAAGCTGTTGCGgtatgctctt ... catggtgcagGAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAA
EST: ATGAGACGCATTTTGGTATCATTGATGCCCAAGCGCAGAAAGCTGTTGCG GAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGNGCAGAGGCCCTTGAEST: gi|426182|gb|D22042.1|D22042
genomic: ATGAGACACATTTTGGTATCATTGATGCCCAAGCACAGAAAGCTGTTGCGgtatgctctt ... catggtgcagGAAAAACAACCATTTGAACGAATTGAGGTCTCCAGG-GCAGAGGCCCTTGA
EST: ATGAGACACATTTTGGTATCATTNATGCCCAAGCACAGAAAGCTGTTGCG GAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAAEST: gi|58689159|gb|CK077846.1|CK077846
genomic: ATGAGACACATTTTGGTATCATTGATGCCCAAGCACAGAAAGCTGTTGCGgtatgctctt ... catggtgcagGAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAA
EST: ATGAGACGCATTTTGGTATCATTGATGCCCAAGCGCAGAAAGCTGTTGCG GAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAAEST: gi|29657070|gb|CB653345.1|CB653345
genomic: ATGAGACACATTTTGGTATCATTGATGCCCAAGCACAGAAAGCTGTTGCGgtatgctctt ... catggtgcagGAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAA
EST: ATGAGACACATTTTGGTATCATTGATGCCCAAGCACAGAAAGCTGTTGCG GAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAA
genomic: ATGAGACACATTTTGGTATCATTGATGCCCAAGCACAGAAAGCTGTTGCGgtatgctctt ... catggtgcagGAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAA
cgtaattggaatcatctatctgctaactcttggtttttaacccaacatggtgcagGAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAAATGTTCGCAGAAAATAAATTTAAG
tttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatcgttattggattccatgattatgccatgttttctttgtaacgtaattggaatcatctatctgctaactcttggtttttaacccaacatggtgcagGAAAAACAACCATTTGAACGAATTGAGGTCTCCAGGGCAGAGGCCCTTGAAATGTTCGCAGAAAATAAATTTAAG
- - - - - - - -ttccatg
- - - - - - - - - - - - - -gccatgt
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