1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggttctttgatgcttcttcattacaatcactttgcaatctgaaaacaccttagatcatctttcacaggtaacattacaattctttattactgagtgttttctttttgtgatccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCGCCGTCCAGCTCGCCAACGCCAGGGACAAGCCATG
species | Oryza sativa |
transcript | LOC_Os08g17390.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCGACACCGCCEST: gi|86254877|gb|CI016997.1|CI016997
genomic: TCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGGCCAACACCGCCEST: gi|84117395|gb|CD151162.1|CD151162
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|88225708|gb|CI225624.1|CI225624
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: TCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|88219694|gb|CI219254.1|CI219254
genomic: TCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|33797795|gb|CF324757.1|CF324757
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|86501067|gb|CI143700.1|CI143700
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|86859484|gb|CI278882.1|CI278882
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|88974544|gb|CI022085.1|CI022085
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|38473524|gb|CF957656.1|CF957656
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|86499661|gb|CI142294.1|CI142294
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|87021778|gb|CI277945.1|CI277945
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCEST: gi|86504480|gb|CI147113.1|CI147113
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
EST: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAA CTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
genomic: AGACTGTGGGGAAGGACACCAATATCCTGTTCATCACCACTCCTGGCCAAgtaggttctt ... ccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCC
ggtaacattacaattctttattactgagtgttttctttttgtgatccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCGCCGTCCAGCTCGCCAACGCCAGGGACAAGCCATG
aggtaac putative branch site (score: 13)
attacaattctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttctttgatgcttcttcattacaatcactttgcaatctgaaaacaccttagatcatctttcacaggtaacattacaattctttattactgagtgttttctttttgtgatccatgataagCTCACCTGCCTCATCAACGACTCCGTCGGCGTCGTCGCGACCAACACCGCCGCCGTCCAGCTCGCCAACGCCAGGGACAAGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC