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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatccacattttacaaaattactttaatcctattttgctgcacaataaagtctcttagttcttaactattgcttgctcaatgatgtcagTTGTGTTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATCAAGACACAGTTTTCTTGACTG

Basic information

species Oryza sativa
transcript LOC_Os08g12890.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g12890.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G149969_T02 (Zea mays), 3'ss of exon 4
gtaatccacattttacaaaattactttaatcctattttgctgcacaataaagtctcttagttcttaactattgcttgctcaatgatgtcagTTGTGTTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATCAAGACACAGTTTTCTTGACTG
|| |||| |||||| | ||| ||||||    |||       |||  |  || ||||| |   | |||| |||||| |  ||||||   ||| || ||||| || ||||||||||||||||||||||||||  | ||||||||||||||||||||||| |||||
gtgatccccatttt-cgaaaatacttt----cta-------gcatgacgaactctctcaccacgtaaccattgctcgtacaatgaatgcagCTGCGTTCCTCTTCACAATTTTGACTATGTGTACGACTTTCTCATGGGATCAAGACACAGTTTTCTGGACTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctgcacaataaagtctcttagttcttaactattgcttgctcaatgatgtcagTTGTGTTCCCCTACACAATTTTGACTATGTGTACGACTTCTTGATGGGATCAAGACACAGTTTTCTTGACTG
                         tcttaac  putative branch site (score: 2)
                           ttaactatt  TA-rich tract