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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG

Basic information

species Oryza sativa
transcript LOC_Os08g08840.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G180720_T02 (Zea mays), 3'ss of exon 4
tatattgtatttgat-gat-ttacaacatact-acagcgtatgcagcaacacttgagtattt-tattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
  |||| | || ||| ||| |||  |  || | | || | ||     | |||    |||| | || |||||||      | | ||    |||||||| || ||||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||||||||| 
--tattattttggattgatgttaggatctaatgatagtg-atattatatcacgactgtatgtatactgatattttccctaatgtgttactgttgaat-ttatagGTGGATTGCTGCACAGAGCGTGTTCTACCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATTTCTCCATTGACATTCAGCATTGGCAATACA

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G431314_T01 (Zea mays), 3'ss of exon 4
-tatattgtatttgatgatttacaacatactacagcgtatgcagca-acacttgagtattttattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
   |  ||   ||  |||      | ||| ||    | ||  |    |   |||  | | | |||||||||      |   ||    ||| |||| || ||||||| | |||||||||||||| ||||| |||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||| ||||||||||||||||| 
tagtgctgcccttattgaggacttatatattatgttggattaattttatgattgcatgtat-attgatattttccctaacgtgttactgtcgaat-ttatagGTGGATCGCTGCACAGAGCGTGTTCTATCACTTATATAACCAGGTGTCCTACATGTCTCTCGATCAGATCTCTCCATTGACGTTTAGCATTGGCAATACA

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA01G28460.1 (Glycine max), 3'ss of exon 7
----------------------------------------------------tatattgtatt-tgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgatattacttaaattttgg--ggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
                                                     || |  |||| |  || ||||   |||  |   | |     |  |||  | | |  || |||| ||   |  |   |   |   |||| ||||   |||||||||||| ||||| |||||||| ||||||||| | ||||| || ||  | |||| |||||| ||| |||||||||| || |||||||||||||| || || 
gtaagcatatttttgtaattttttactgttagtttttgaattggttcaacaagatttcttattgttgtgctttatttcatgttgttgggc-caaattaac-ttagtgggttctatttatcaaatgttgttaacgaatggattttgatgcttgtagGTGGGTAGCTGCTCAGAGCGTCTTCTACCACCTGTACAATCAAGTCCCATACACGTCTCTTGATCAGATTTCTCCCTTAACATTTAGCATTGGAAACACA

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA18G12080.1 (Glycine max), 3'ss of exon 4
tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgatattacttaaattttgg--ggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
 ||   ||  |   |  ||| || | | |||     |  |    | |   ||    | | | |  ||| ||| ||  | |||  |    ||| | |    |||||||| ||||| || || || ||||| ||  ||||||| || ||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| || || 
gattgagttgtctgttgttttcatcct-ctatcttttgagtctgagcttctgctcttctcaatattatgactaaatgtatggctgacaattgtacacaacaGGTGGGTAGCTGCTCAAAGTGTATTCTATCATCTATACAATCAAGTGTCGTACATGTCTCTGGATCAGATCTCTCCCTTGACGTTTAGCATTGGAAACAC-

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA02G25290.1 (Glycine max), 3'ss of exon 4
tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgatattacttaaattttgg--ggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
  | |  |  |   |  ||  || | | ||| |   |       | |   ||  | | | | |  ||| ||| ||  | |||  ||   ||  | |    |||||| | ||||| || || || ||||| ||  ||||||| || ||||| ||||||||||||||| |||| ||||| ||||| ||||||||||| || || 
-ttctgattgtctgttgttctcatcct-ctatattttgattctgagcttctgcttttctcaatattatgactaaatgtatggttggtaattttacacaacagGTGGCTAGCTGCTCAAAGTGTATTCTATCATCTATACAATCAAGTGTCATACATGTCTCTGGATCAGATCTCTCCTTTGACGTTTAGCATTGGAAACACC

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA15G11270.1 (Glycine max), 3'ss of exon 3
tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattg-atattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
 ||   || |||  |  ||| |    | |   | |  |  || | |  |||  || |    ||  | | |  |   |  |   |||| ||||   ||  |||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||||||| ||| |||||||||| || ||||| |||||||| || || 
aattcagtctttttttcttttccttcttccttaac-cacccacccaaccttatgtctccctttataaaatgttgttaactaatggattttgatgtttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATTGGAAACACA

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA02G45840.1 (Glycine max), 3'ss of exon 4
tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgatat-tacttaaattttggg--gatg-ttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
   | |  || ||||  ||     | |   ||      | | | || ||||  |  |||  |||   | || |||||  |  ||  | |  |||   |    |||||||| || || || ||| | || || ||  | ||||| || ||||| |||||||||||||||||||| ||||| ||||||||||||||||| || || 
--gagta-atctgatt-ttcttgtcttttcacttgaggttctgaaaaacttctgcgtttctttgtcttgtaattaaacatatggctgctacttgtgcacaacagGTGGGTGGCAGCTCAAAGCATATTTTATCATCTGTACAATCAAGTGTCGTACATGTCTCTGGATGAGATCTCTCCCTTGACATTTAGCATTGGAAACACC

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA13G27680.1 (Glycine max), 3'ss of exon 3
----------------------------------------------------tatattgtatt-tgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgat--attacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
                                                     || |  |||| |  || |||  |    |       |     |   |   | | | ||| | || ||  | |  |   |  |   |||| ||||   |||||||||||| ||||||||||| || || |||||||| ||||| || || || ||||||||||| ||| |||||||||| || |||||||||||||| || || 
gtaagcacatttttttaattttttactgttagtttttgaattggttcaacaagatttcttattgttgtgctttttatttcatgttgttgggccaaattaacttagtggattctgtttatcaaatgttgttaactaatggattttgatgtttgtagGTGGGTAGCTGCACAGAGTGTCTTTTACCACTTGTACAATCAAGTCTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTTAGCATTGGAAACACA

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA17G01890.1 (Glycine max), 3'ss of exon 3
-------tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
       | | |  |   ||   | | | |||  |  ||    | | || |||   || |  |||  ||    |||| |||| |  ||||  | || | | ||  |||||||| ||||| ||||| || ||||||||  | ||||| || || |||||||||||||| ||| |||||||||| || ||||| ||||| || || || 
ctggtcatttgtgattgctgccaagtcaaaaccaatcac--tttcttcatcaaatgtttaacattaaat---cattaattaactactggg--ttttaatttttacagGTGGGTAGCTGCCCAGAGTGTCTTCTACCATCTGTACAATCAAGTCTCTTACATGTCTCTTGATCAGATTTCTCCCTTAACATTCAGCATAGGGAACACA

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA14G02930.1 (Glycine max), 3'ss of exon 4
tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattga--tattacttaaattttggggatg--ttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
       ||| | || |||     | |   ||      |   | ||  |||  | ||||  |||   ||| | | ||  | |||       |||        |||||||| || || |||||| | || || ||  | ||||| || ||||| |||||||||||||||||||| ||||| || |||||||||||||| || || 
---gagttatctaat-attcttgtcctttcacgtgtggttatgaaaatcttctgcatttctttgtcttatgattaaacatatggctgctacttgtgcgcaacagGTGGGTGGCAGCTCAGAGCATATTTTATCATCTTTACAATCAAGTGTCATACATGTCTCTGGATGAGATCTCTCCCTTAACATTTAGCATTGGAAACACC

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv10s0116g00760.t01 (Vitis vinifera), 3'ss of exon 3
tatattgtatttgatgatttacaacatactacagcgtatgcagcaaca-cttgagtattttattgatattacttaaattttggggatgttgaatat-tgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
 |  ||  | |  |  | |  ||     |||              ||  |||   |   ||| | |  | |  ||  | | ||   |  |   ||| ||||||||||| || || ||||| || ||||| ||||| || || ||||| || |||||||| |||||| |||| ||||| ||||| |||||||| || || |||
-agttttcaataaactagtggcactgctctatttttagaattttgacttctttgatgccttactaacgtgaagtatgtgt-ggttctaatttgtatgtgtagGTGGGTGGCGGCTCAGAGTGTCTTCTATCACTTGTATAATCAGGTATCATACATGTCCCTGGATCAGATCTCTCCCTTGACGTTTAGCATAGGAAACACG

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv19s0177g00300.t01 (Vitis vinifera), 3'ss of exon 3
-tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
 |    ||| |||     |       |      ||    |         ||||  | ||     |  | |  ||   |    |  || ||| | || |||||||||| || || ||||| || ||||| ||| | ||||| |||||||| |||||||| ||||||||||| ||||| ||||| ||||||||||| || || 
attccctgtgtttcccactcagttgtaagtggtagttgttttctttttgcttggcttttgctaaggaaatgtttgtgtggctgttat-ttgtacatggtagGTGGGTGGCGGCCCAGAGTGTATTCTATCACCTCTACAATCAGGTGTCATACATGTCGCTGGATGAGATCTCTCCCTTGACGTTTAGCATTGGAAACACC

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: PP1S241_24V6.1 (Physcomitrella patens), 3'ss of exon 3
tatattgtatttgatgatttacaacatactacag---cgtatgcagcaacacttgagtattttattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
 | ||   ||  |||| || |     | ||  ||    ||  |||      |  | | ||  |  |||| ||          ||  |||  |  |||| | |||||||| |  |||||||| || || || ||||| ||||| || ||||||||||||||  || | |||||||||||  | ||||||||||| || ||||| 
aagatcagata-gatgtttcatgtt-ttctgtagatatgtcagcattgttgcgagggcatcctgctgatgttttacttgagctgacgattgttgatat-gcagGTGGGTCGTGGCACAGAGTGTGTTTTATCACTTGTACAATCAAGTGTCTTACATGTCATTGAACGAGATTTCTCCTCTCACATTTAGCATCGGTAATACC

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: PP1S70_177V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------------------------------------------------------tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttatt--gatattacttaaattttggggatgttgaatat-tgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
                                                                                                  |  || | ||   | |  |  | | | | |   |     |   | | | ||| ||     |  | | |||   ||    |  || || ||  | | ||||||||||| |  || ||||| || ||||||||||| |||||||||||||| |||||||| ||| | |||||||| ||| |||| || ||||||||||| || 
gtagctgcatctattagttttcctgttactactagaacgtaaactgtattgttggtgcggtttttagtatgtgagcttgtgcatgagctttccccaggtggtgaagttttcggtcgagtagagaatgcgttgaggataatgagagtggagcatgagggtcaggttttaaccaatccgtttgg-tgatggttgtgtgtagGTGGGTGGTGGCGCAGAGTGTATTCTACCACTTGTACAACCAGGTGTCATACATGTCGCTGAACGAGATTTCGCCACTGACCTTCAGCATTGGCAACACC

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: PP1S18_317V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------tatattgtatttgatgatttacaacatactacagcgta--tgcagcaacacttgagt--attttat---tgatattacttaaat-------tttggggatg-ttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
                                        | | ||   ||    |  || ||  |||   | | ||   ||| |    || ||||   || |||    |||   || ||||         |  |   ||| |||     || |||||||| |  |||||||| || |||||||||||||||||||| ||||| ||||||||  ||||  | || || ||| | ||||| ||| ||||||| |||
gtgaagcccccctccaggaacaccttgcagaacacctttgtgtctttacttctgagggttgcaggatatcgcggtgttgctgcgggtttacatgagcgaatattacgaatgacggtatttaagcaagttgataagaaaatggttgtgcgatgcagGTGGGTAGTGGCACAGAGTGTGTTCTACCACTTATACAACCAAGTGTCATACATGTCATTGGACAAAATCTCCCCACTCACATTCAGCGTTGGCAACACG

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 3'ss of exon 4
lower sequence: EFJ35859 (Selaginella moellendorffii), 3'ss of exon 3
tatattgtatttgatgatttacaacatactacagcgtatgcagcaacacttgagtattttattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
     |    ||| | | || |||   |||  ||  | |||       |||     |  | |   | || || |     |  |  || | |  |     |||||||    ||||||||||| ||||||||||| |||||||| || || || ||||| |||||  |||| |||||  |||| || |||||||| || || 
----gtaacgttggtcacttccaa---acttgagactctgc-------cttccccgtcgt-tctttctttctcacgccgtccgtctgctaacca-----gGTGGGTGATCGCACAGAGCGTCTTCTACCACTTGTACAACCAAGTCTCGTATATGTCGCTGGACCAGATATCTCCGCTGACTTTCAGCATTGGTAACACC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86498017|gb|CI140650.1|CI140650
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|88844498|gb|CI020345.1|CI020345
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|2799547|gb|AA752536.1|AA752536
EST:     GCTGCTGGTTGGCAAA-GGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|89167940|gb|CI109144.1|CI109144
EST:     NCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         TTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|86253198|gb|CI058123.1|CI058123
EST:     NCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|58590139|gb|CF988447.1|CF988447
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|87024623|gb|CI259338.1|CI259338
EST:     TCTGCTGGTTGCCAAAAGGCTCTTGCGGAAGTTGGTTCCAATGTTGTCTG                         GTGGGTTTCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|86500797|gb|CI143430.1|CI143430
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|88840622|gb|CI080076.1|CI080076
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|88842335|gb|CI081591.1|CI081591
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|58670578|gb|CK059264.1|CK059264
EST:     GGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|88837113|gb|CI078473.1|CI078473
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
EST: gi|86493864|gb|CI136497.1|CI136497
EST:     GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTG                         GTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA
genomic: GCTGCTGGTTGGCAAAAGGCTCTTGCGGAAGTTGGTCCCAATGTTGTCTGgtaagcaata ... aatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacttgagtattttattgatattacttaaattttggggatgttgaatattgtagGTGGGTTGCTGCACAGAGCGTTTTCTACCACTTATACAACCAGGTGTCTTACATGTCTCTGGATGAGATTTCTCCATTGACATTTAGCATTGGCAATACG
              tattgat  putative branch site (score: 3)
     tgagtattttattgat  TA-rich tract