1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttacttctgatttcacaacttcttgacaaagatcaatttcttattgtgttaccatccttaaagtcgagcagttttcttttaacagGGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATCCAGCAGTCTAAGTTTATGTCTGTTGATTCAGATCGTTTAAAAGCTGAAG
species | Oryza sativa |
transcript | LOC_Os08g08220.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CGAAGGAGAATAGCTCTCATTGTGCAGGTGGAATTCTTGCAGATGATCAG GGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATCEST: gi|29619028|gb|CB624040.1|CB624040
genomic: CGAAGGAGAATAGCTCTCATTGTGCAGGTGGAATTCTTGCAGATGATCAGgttacttctg ... cttttaacagGGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATC
EST: CGAAGGAGAATAGCTCTCATTGTGCAGGTGGAATTCTTGCAGATGATCAG GGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATCEST: gi|29619027|gb|CB624039.1|CB624039
genomic: CGAAGGAGAATAGCTCTCATTGTGCAGGTGGAATTCTTGCAGATGATCAGgttacttctg ... cttttaacagGGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATC
EST: CGAAGGAGAATAGCTCTCATTGTGCAGGTGGAATTCTTGCAGATGATCAG GGTCTTGGCAAAACAGTGTCTANCA-TTGCCCTTATACA
genomic: CGAAGGAGAATAGCTCTCATTGTGCAGGTGGAATTCTTGCAGATGATCAGgttacttctg ... cttttaacagGGTCTTGGCAAAACAGTGTCTA-CAATTGCCCTTATACA
gatcaatttcttattgtgttaccatccttaaagtcgagcagttttcttttaacagGGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATCCAGCAGTCTAAGTTTATGTCTGTTGATTCAGATCGTTTAAAAGCTGAAG
ttttctttt CT-rich tract
ttttcttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacttctgatttcacaacttcttgacaaagatcaatttcttattgtgttaccatccttaaagtcgagcagttttcttttaacagGGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATCCAGCAGTCTAAGTTTATGTCTGTTGATTCAGATCGTTTAAAAGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG