Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgagctgctttttttatcgagtcataaggttttttttttattaatttagaatatgatgttaatgtactctttgttggaaaattgtagTGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGT

Basic information

species Oryza sativa
transcript LOC_Os08g04110.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g04110.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G022793_T01 (Zea mays), 3'ss of exon 4
gtatgtgagctgctttttttatcgagtcataaggttttttttttattaatttagaatatgatgttaatgtactctttgttggaaaattgtagTGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGT
||||||| ||| |  |   | | || |  | |||          |  |  | || || |||| || ||| |||     ||| |  ||   |||||| ||||| |||||||| || ||||| || |||||||| ||||||||||| | |||||||||| ||||||||||||||||||||||||| ||||||||
gtatgtgtgctaccctcagttttga-ttgtgagg----------aaaatatcaggatttgattttgatgaacttaccattgaatgat-acagTGCCTGTAGCCGTGTTTCTTCTGGGAGCAGCATTTGGCCTGGAAGAAATGAGCTATAAAATGCTTTCTATCATGTCTGTCATCAGTGTTGGAGTTATTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58598476|gb|CK009004.1|CK009004
EST:     TGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAAGCAATAA                         TGCCCGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTCGAAGAAATGA
genomic: TGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAAgtatgtgagc ... aaaattgtagTGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGA
EST: gi|58600548|gb|CK011076.1|CK011076
EST:     TGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAAGCAATAA                         TGCCCGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTCGAAGAAATGA
genomic: TGCTTACCTCTATATATCTGTTGCATTTGCACAGATGCTGAAGGCGATAAgtatgtgagc ... aaaattgtagTGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttattaatttagaatatgatgttaatgtactctttgttggaaaattgtagTGCCAGTAGCTGTGTTTCTCCTTGGAGCTGCCTTTGGCCTTGAAGAAATGAGTTGTAAAATGCTTGCTATCATGTCTGTCATCAGTGTTGGGGTTATTGT
     ttattaatttagaata  TA-rich tract