1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttttccattgatcatttcgttttgatgggtgagagtctgagagatgatcagagttcagaactgacggttatttttttctgtgttctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG
species | Oryza sativa |
transcript | LOC_Os08g03350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCGACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|4716501|gb|AU057617.1|AU057617
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|89162523|gb|CI099215.1|CI099215
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|86598121|gb|CI278511.1|CI278511
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|89164964|gb|CI102052.1|CI102052
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: TCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|86853761|gb|CI250012.1|CI250012
genomic: TCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|88245570|gb|CI245419.1|CI245419
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|86497707|gb|CI140340.1|CI140340
genomic: GGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|29630538|gb|CB635547.1|CB635547
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCGACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|88247938|gb|CI247787.1|CI247787
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|4716084|gb|AU057200.1|AU057200
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|89177928|gb|CI391107.1|CI391107
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCEST: gi|88901693|gb|CI001801.1|CI001801
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
EST: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTC CTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
genomic: GATTGCTTGGGTTCTTCGGTGGATTCGCCTTCGCGCCAACTACTTACTTCgtaagttttc ... tctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTC
gagagatgatcagagttcagaactgacggttatttttttctgtgttctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG
aactgac putative branch site (score: 61)
ttatttttttctgtgt putative PPT
ttatttttttctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttccattgatcatttcgttttgatgggtgagagtctgagagatgatcagagttcagaactgacggttatttttttctgtgttctttggcagCTTCCCTGCATCATGTGGCTAGCAATCTACAAGCCAAGAAGGTTCAGTCTCTCATGGTTCACCAACTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG