1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagcttttgcgatcatcttcttcatggtgattgggtgaatgattgttgctgaaatcgcatgagtctgtttgtaatggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAGGAAGCTGGAGGAGCAGCAGCAGGCCGCCGAGCTGCAGCAGGCGATCGA
species | Oryza sativa |
transcript | LOC_Os07g48410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58598485|gb|CK009013.1|CK009013
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|86904436|gb|CI308646.1|CI308646
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58603862|gb|CK014390.1|CK014390
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58673551|gb|CK062237.1|CK062237
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58666711|gb|CK055397.1|CK055397
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58607189|gb|CK035222.1|CK035222
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGATATGCTGCTGAGGAEST: gi|58676590|gb|CK065277.1|CK065277
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58660017|gb|CK048697.1|CK048697
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|29666734|gb|CB663009.1|CB663009
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58673342|gb|CK062028.1|CK062028
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58599584|gb|CK010112.1|CK010112
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|58659889|gb|CK048569.1|CK048569
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: GCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCGTGAGGEST: gi|58612737|gb|CK040449.1|CK040449
genomic: GCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGC-TGAGG
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAEST: gi|29681057|gb|CB677332.1|CB677332
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
EST: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCG GTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
genomic: TACTCCAACTGGACTCGATGCCAGAGACCCCTTCGACATGCACCAGCTCGgtgagctttt ... atggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGA
gattgggtgaatgattgttgctgaaatcgcatgagtctgtttgtaatggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAGGAAGCTGGAGGAGCAGCAGCAGGCCGCCGAGCTGCAGCAGGCGATCGA
tttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttttgcgatcatcttcttcatggtgattgggtgaatgattgttgctgaaatcgcatgagtctgtttgtaatggtgtcagGTGCGAGAATGCTGCAGCACTCCAACAGCGCGAATGAGATGCTGCTGAGGAGGAAGCTGGAGGAGCAGCAGCAGGCCGCCGAGCTGCAGCAGGCGATCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG