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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttcatccttttatttttaagaatgtgtgggctcaactgtactaaattatctcccttcctttgggtgtagaggggatgttctgtttcaatttcatcatgatgtgaagtgtcttatccttataatttgcagGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCATCGCTGCAAGGTTGTTATCCCAAAAGGGGTTTGTACCAGGCTTTAGCTG

Basic information

species Oryza sativa
transcript LOC_Os07g47270.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47270.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G177061_T01 (Zea mays), 3'ss of exon 4
gtaggttcatccttttatttttaagaatgtgtgggctcaactgtactaaattatctcccttcctttgggtgtagaggggatgttctgtttcaatttcatcatg-atgtgaagtgtct--tatccttataatttgcagGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCATCGCTGCAAGGTTGTTATCCCAAAAGGGGTTTGTACCAGGCTTTAGCTG
                              || || | ||||| ||| | |||| ||  ||| ||||| |   |  || |    |  | | |  ||| |||    ||| ||||||||  | |||  | |||||||||||||||||||| || |||||||||||||||||||||||  | || ||||||| | |||| ||  | || || ||||||||||||||||||||  ||||||
------------------------------gtaggtttaactgcactgagttat-tctattcatttggtttagggaggcaaaggccatgtta-cttcttcacacgtgttaagtgtctgttctccacaaaatttgcagGCTCGTCCACTTTTCAGAGACCGAAGGAAGTTCTGCCAGCTCGCTGATCCATTGTTGCATGGCCGCTACCCGAAAAGGGGTTTGTACCAGGCCATAGCTG

upper sequence: LOC_Os07g47270.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G048210_T02 (Zea mays), 3'ss of exon 4
gtaggttcatccttttatttttaagaatgtgtgggctcaactgtactaaattatctcccttcctttgggtgtagaggg--gatgttctgtttcaatttcatcatgatgtgaagtgtct--tatccttataatttgcagGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCATCGCTGCAAGGTTGTTATCCCAAAAGGGGTTTGTACCAGGCTTTAGCTG
                              || || | ||||| ||| | |||| ||  ||| ||||| |   |  ||   | |  ||||| |   |||| || | ||| ||||||||  | |||  | |||||||||||||||||||| || |||||||||||||||||||||||  | || ||||||| | |||| ||  | || || |||||||||||||||||||| |||||||
------------------------------gtaggtttaactgcactgagttat-tctattcatttggtttagggaggcaaaggccctgttacttcttca-cacg-tgttaagtgtctgttctccacaaaatttgcagGCTCGTCCACTTTTCAGAGACCGAAGGAAGTTCTGCCAGCTTGCTGATCCATTGTTGCATGGCGGCTACCCGAAAAGGGGTTTGTACCAGGCCTTAGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27920800|gb|CB096608.1|CB096608
EST:     AAGCCATTGATCACACCCAGCCTGCAGGGGAGCAAAATCTTGTTGCATGG                         GCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCA
genomic: AAGCCATTGATCACACCCAACCTGCAGGGGAGCAAAATCTTGTTGCATGGgtaggttcat ... taatttgcagGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttctgtttcaatttcatcatgatgtgaagtgtcttatccttataatttgcagGCTCGTCCACTGTTTAGAGACCGAAGGAAGTTCTGCCAAATGGCCGATCCATCGCTGCAAGGTTGTTATCCCAAAAGGGGTTTGTACCAGGCTTTAGCTG
                                       tccttat  CT-rich tract
                                    ttatccttataattt  TA-rich tract