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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactataatacaatttgctccataattgagtatgtccctaatagtcgcagtagtggcttctttgcagttcacttatgttctccatggtgttttcagGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGT

Basic information

species Oryza sativa
transcript LOC_Os07g46720.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46720.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA17G13770.1 (Glycine max), 3'ss of exon 4
gtaactataatacaatttgctccataattgagtatgtccctaatagtcgcagtagtggcttctttgcagttcacttatgttctccatggtgttttcagGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGT
                       | ||||       ||  |    ||   | |  ||  |  ||  |  |     | | ||   | || |||||||||| |||||| | || ||||| || |||||||| ||||| || || || || ||||| ||| | |||||||| |||||||||||  | ||||| || || ||
---------------------gtagaatt---ctcatctttttgggtttaacttttgcttcgttctctatctgaatctttttctcttgatgttttcagGACAGGATTTGTCCCCAGTGGACTTGATCAACGTCCATCAATTTGCACAGAGGGTAATGGACCTATCTGAGTACAGAAAAAACTTGTATGATTACCTGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689280|gb|CK077967.1|CK077967
EST:     AGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGG                         GCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAA
genomic: AGATGAGGACAAGGCAAAAGAAATTGTTGAAGCAGCAAAGGCATCCATGGgtaactataa ... gtgttttcagGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtcgcagtagtggcttctttgcagttcacttatgttctccatggtgttttcagGCCAGGATCTTTCACCAGTTGATTTGATCAATGTCCAACAGTTCGCTCAAAGGGTCATGAATCTATCTGAATACAGAAAAAATCTTTATGAGTATCTAGT
                                              tgttttc  CT-rich tract
                               ttatgtt  TA-rich tract