1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actcaaggtgaaaactgtgtttgagtgggtcaaattgtgcagtcatttgctcagctttgcttggtgagtgcagactgatggattattcttttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACATATTCCCCGATGCTGTTCAGAAACTTGATGATGCCCTTCGTCTGTTTGC
species | Oryza sativa |
transcript | LOC_Os07g46660.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTG GTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGAGTGATCCATCTTGACAEST: gi|58672879|gb|CK061565.1|CK061565
genomic: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTGgtaaaatttt ... ttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACA
EST: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTG GTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACAEST: gi|66919105|gb|CX105953.1|CX105953
genomic: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTGgtaaaatttt ... ttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACA
EST: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTG GTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACAEST: gi|29628666|gb|CB633677.1|CB633677
genomic: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTGgtaaaatttt ... ttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACA
EST: GTTAACTGCTA-TTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTG GTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACAEST: gi|25803696|gb|CA759657.1|CA759657
genomic: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTGgtaaaatttt ... ttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACA
EST: TTAACTGCTATTTTTGGAGGCCAGCTGC-AAGCCTGTGTGAAAGCTACTG GTAACAAAGCATCAGTCACCGTTCAGCCTNTTCGACTGATCCATCTTGACAEST: gi|58676223|gb|CK064910.1|CK064910
genomic: TTAACTGCTATTTTTGGAGGCCAGCTGCAAAG-CTGTGTGAAAGCTACTGgtaaaatttt ... ttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACA
EST: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTG GTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACAEST: gi|4715803|gb|AU056919.1|AU056919
genomic: GTTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTGTGAAAGCTACTGgtaaaatttt ... ttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACA
EST: TTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTNTGGTGAAAGCTACTG GTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACA
genomic: TTAACTGCTATTTTTGGAGGCCAGCTGCAAAGCTGTG-TGAAAGCTACTGgtaaaatttt ... ttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACA
tttgctcagctttgcttggtgagtgcagactgatggattattcttttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACATATTCCCCGATGCTGTTCAGAAACTTGATGATGCCCTTCGTCTGTTTGC
gactgat putative branch site (score: 3)
ttattcttttatct putative PPT
attattcttttatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcaaggtgaaaactgtgtttgagtgggtcaaattgtgcagtcatttgctcagctttgcttggtgagtgcagactgatggattattcttttatctgcagGTAACAAAGCATCAGTCACCGTTCAGCCTTTTCGACTGATCCATCTTGACATATTCCCCGATGCTGTTCAGAAACTTGATGATGCCCTTCGTCTGTTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - -attgtgc
- - - - - - - - - - - - - - - - - - - - - -catttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg