1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...atatactttagcttaggtttttgtaatttgtttattttcagttatttgcttccatatttcgttccttggcattcttttcatttccttcatacttttccagGTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTGAGACATTTCCTGAGCCTAATAGGCGGCTGCTACAGAG
species | Oryza sativa |
transcript | LOC_Os07g46450.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCTTCTCCAGTACCTGCTTCCTGCTGCACAGCCTTATTGGAAGCTTTTC GTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTGEST: gi|58671855|gb|CK060541.1|CK060541
genomic: ATCTTCTCCAGTACCTGCTTCCTGCTGCACAGCCTTATTGGAAGCTTTTCgtaagtgctc ... acttttccagGTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTG
EST: ATCTTCTCCAGTACCTGCTTCCTGCTGCACAGCCTTATTGGAAGCTTTTC GTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTGEST: gi|88422394|gb|CI689211.1|CI689211
genomic: ATCTTCTCCAGTACCTGCTTCCTGCTGCACAGCCTTATTGGAAGCTTTTCgtaagtgctc ... acttttccagGTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTG
EST: ATCTTCTCCAGTACCTGCTTCCTGCTGCACAGCCTTATTGGAAGCTTTTC GTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTG
genomic: ATCTTCTCCAGTACCTGCTTCCTGCTGCACAGCCTTATTGGAAGCTTTTCgtaagtgctc ... acttttccagGTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTG
ttgcttccatatttcgttccttggcattcttttcatttccttcatacttttccagGTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTGAGACATTTCCTGAGCCTAATAGGCGGCTGCTACAGAG
cattcttttcatttcc CT-rich tract
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatactttagcttaggtttttgtaatttgtttattttcagttatttgcttccatatttcgttccttggcattcttttcatttccttcatacttttccagGTCTGGAGAGCAAGGAATCTCGGATAAATTCTATGCGTGCGGCAATATCTGAGACATTTCCTGAGCCTAATAGGCGGCTGCTACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT