1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaactttcctaggacacttgcttaccttagacagtactacaaaggttctctgcatcagtgtcctgaccttctcttggtgaattagGCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCCATGAGCAGTACTTAGGCTGGCTAAGCCCAAACATCGT
species | Oryza sativa |
transcript | LOC_Os07g46280.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAG GCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCCEST: gi|29664412|gb|CB660687.1|CB660687
genomic: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAGgtaactttcc ... ggtgaattagGCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCC
EST: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAG GCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCCEST: gi|33653413|gb|CF276027.1|CF276027
genomic: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAGgtaactttcc ... ggtgaattagGCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCC
EST: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAG GCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCCEST: gi|58673231|gb|CK061917.1|CK061917
genomic: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAGgtaactttcc ... ggtgaattagGCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCC
EST: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAG GCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCCEST: gi|44664928|gb|CR278362.1|CR278362
genomic: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAGgtaactttcc ... ggtgaattagGCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCC
EST: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAG GCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCC
genomic: GGAAGGAGTTGATTATTACAACAGGTTAATAGATTACATGGTTAAGAAAGgtaactttcc ... ggtgaattagGCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCC
acagtactacaaaggttctctgcatcagtgtcctgaccttctcttggtgaattagGCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCCATGAGCAGTACTTAGGCTGGCTAAGCCCAAACATCGT
tcctgac putative branch site (score: 2)
ccttctcttg CT-rich tract
tgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactttcctaggacacttgcttaccttagacagtactacaaaggttctctgcatcagtgtcctgaccttctcttggtgaattagGCATCAAACCGTACGCAAACCTCTACCACTATGACCTACCATTAGCACTCCATGAGCAGTACTTAGGCTGGCTAAGCCCAAACATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG