1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gcttgattcttttaacatactatttagagctcttttagtatcataaattgcatattaggttcttagatgctcaatactactttaatataattcaccacagGATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGGTTAGTTTTAACTGTTGCTAGCGAAGTTTTTGAGGAGTCAGGGCGGACAC
species | Oryza sativa |
transcript | LOC_Os07g45350.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGATTCCGCTGTGATGCTTTCTGTTAGCAAAGAAGTTCCATGGTACCTG GATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGGEST: gi|29684518|gb|CB680793.1|CB680793
genomic: AAGATTCCGCTGTGATGCTTTCTGTTAGCAAAGAAGTTCCATGGTACCTGgtaattaact ... ttcaccacagGATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGG
EST: AAGATTCCGCTGTGATGCTTTCTGTTAGCAAAGAAGTTCCATGGTACCTG GATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGGEST: gi|58693123|gb|CK081810.1|CK081810
genomic: AAGATTCCGCTGTGATGCTTTCTGTTAGCAAAGAAGTTCCATGGTACCTGgtaattaact ... ttcaccacagGATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGG
EST: AAGATTCCGCTGTGATGCTTTCTGTTAGCAAAGAAGTTCCATGGTACCTG GATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGGEST: gi|29680615|gb|CB676890.1|CB676890
genomic: AAGATTCCGCTGTGATGCTTTCTGTTAGCAAAGAAGTTCCATGGTACCTGgtaattaact ... ttcaccacagGATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGG
EST: AAGATTCCGCTGTGATGCTTTCTGTTAGCAAAGAAGTTCCATGGTACCTG GATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGG
genomic: AAGATTCCGCTGTGATGCTTTCTGTTAGCAAAGAAGTTCCATGGTACCTGgtaattaact ... ttcaccacagGATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGG
aattgcatattaggttcttagatgctcaatactactttaatataattcaccacagGATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGGTTAGTTTTAACTGTTGCTAGCGAAGTTTTTGAGGAGTCAGGGCGGACAC
ctttaat putative branch site (score: 4)
tcaatactactttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgattcttttaacatactatttagagctcttttagtatcataaattgcatattaggttcttagatgctcaatactactttaatataattcaccacagGATGATGGTACCGGCCGTGTTTTTGTTGTTGGAGCTCGTGGTGCAGCTGGGTTAGTTTTAACTGTTGCTAGCGAAGTTTTTGAGGAGTCAGGGCGGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG