1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tacttcacatccccccaaaaaaattactacataatatacatgtttatgtttttttctactgaactacatgggttcatttatcagagttttctttctccagTCTGCAGGCCTTTATTTCCGAGGTCAGCGTATTTGGCAGGCTGCTATGGATGATCTGATGGCCCAAGGAATGAGATATGCTAACCAG
species | Oryza sativa |
transcript | LOC_Os07g44070.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGTTCGATATTGTGATGGCGGATCCTTCACTGGTGATGGGGCTGATGCG TCTGCAGGCCTTTATTTCCGAGGTCAGCGTATTTGEST: gi|10931316|gb|AU161590.1|AU161590
genomic: AGGTTCGATATTGTGATGGCGGATCCTTCACTGGTGATGGGGCTGATGCGgtgagtgcaa ... ctttctccagTCTGCAGGCCTTTATTTCCGAGGTCAGCGTATTTG
EST: AGGTTCGATATTGTGATGGCGGATCCTTCACTGGTGATGGGGCTGATGCG TCTGCAGGCCTTTTATTTCCGAGGTCAGCCGTATTTGGCAGGCTGCTATGGEST: gi|88367213|gb|CI563977.1|CI563977
genomic: AGGTTCGATATTGTGATGGCGGATCCTTCACTGGTGATGGGGCTGATGCGgtgagtgcaa ... ctttctccagTCTGCAGGCCTTT-ATTTCCGAGGTCAGC-GTATTTGGCAGGCTGCTATGG
EST: AGGTTCGATATTGTGATGGCGGATCCTTCACTGGTGATGGGGCTGATGCG TCTGCAAGCCTTTATTTCCGAGGTCCGCGTATTTGGCACGCTGCTATGGATEST: gi|5003056|gb|AU068165.1|AU068165
genomic: AGGTTCGATATTGTGATGGCGGATCCTTCACTGGTGATGGGGCTGATGCGgtgagtgcaa ... ctttctccagTCTGCAGGCCTTTATTTCCGAGGTCAGCGTATTTGGCAGGCTGCTATGGAT
EST: AGGTTCGATATTGTGATGGCGGATCCTTCACTGGTGATGGGGCTGATGCG TCTGCAGGCCTTTATTTCCGAGGTCAGCGTATTTGGCAGGCTGCTATGGAT
genomic: AGGTTCGATATTGTGATGGCGGATCCTTCACTGGTGATGGGGCTGATGCGgtgagtgcaa ... ctttctccagTCTGCAGGCCTTTATTTCCGAGGTCAGCGTATTTGGCAGGCTGCTATGGAT
atgtttttttctactgaactacatgggttcatttatcagagttttctttctccagTCTGCAGGCCTTTATTTCCGAGGTCAGCGTATTTGGCAGGCTGCTATGGATGATCTGATGGCCCAAGGAATGAGATATGCTAACCAG
ttttctttctcc CT-rich tract
ttcatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacttcacatccccccaaaaaaattactacataatatacatgtttatgtttttttctactgaactacatgggttcatttatcagagttttctttctccagTCTGCAGGCCTTTATTTCCGAGGTCAGCGTATTTGGCAGGCTGCTATGGATGATCTGATGGCCCAAGGAATGAGATATGCTAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -catcccc
- - - - - - - -caaaaaa
- - - - - - - - - - - - - - - - - -atacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatg