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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT

Basic information

species Oryza sativa
transcript LOC_Os07g42950.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 3
gtaaaaaggctctatttctattattgactttcgga--tat-tcatgcccttgctctgaccatattat--gttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
||| | || ||   | | ||   |  ||| || |    || |  | | ||   ||| | |  |  ||  | ||    |   | ||| || || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
gtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGGACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 3
---------------gtaaaaaggctctatttctattattgactttcgga--tat-tcatgcccttgctctgaccatattat--gttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
               ||| | || ||   | | |    |  ||| || |    || |  | | ||   ||| | |  |  ||  | ||    |   | |||||| || ||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||
ctctactccataggggtatagagacttcctatgtccagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGTTGAGCGCAGGAGGAATTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 4
gtaaaaaggctctatttctattattgactt---------tcggatattcatgcccttgctctgaccatattatgttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
||| | || || ||| || ||| |   ||          ||   ||    ||    |  ||||| ||| | || | | |||| |   |||||| || |||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||| |||||
gtatatagactgtatctccattgtactctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgt---agGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 4
gtaaaaaggct--ctatttctattattgactttcggatat-tcatgcccttgctctgaccatattat--gttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
||| | || ||  |||| || | | |   ||       || |  | | ||   ||| | |  |  ||  | ||    |   | |||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
gtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 3'ss of exon 3
---------------gtaaaaaggct--ctatttctattattgactttcggatat-tcatgcccttgctctgaccatattat--gttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
               ||| | || ||  |||| || | | |   ||       || |  | | ||   ||| | |  |  ||  | ||    |   | |||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
ttctgctccataggggtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM5G851698_T01 (Zea mays), 3'ss of exon 4
gtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT-----------------------------------------------------------------------
                                                  ||||| ||| | || | | |||| |   |||||| || |||||||| || |||||||||||| |||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||| |||||                                                                       
------------------------------------------------tatctgaacatttgatatgaattgtgt---aggcactccctgcttccgcggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgtattGTGAGCCAAGACCTATCTGTTATCAACTTGGTAATTGTTAAGAAGGGTGAGAACGATCTGCCTGGTTTAACTGACACTGAGAAGCCAAGGATGAGGGGTC

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA15G08210.1 (Glycine max), 3'ss of exon 4
--gtaaaaaggctctatttctattattgactttcggatattcatgccc--------ttgctctgaccatatta---------tgttacttgtatg-gcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
    |   |   | | ||| ||| | ||   |  ||| | |  |  ||        ||  | |  | || |||         |||| |||      ||||| || ||||| |||||||| ||||| |||||  |||| ||||| |||||||||||||| ||||| ||||| |||||||  ||||| |||||| | |||||
tttgaggtactgtttttttttataactggactcaggaaacttttagccaacctttgttattttttcaatgttaaatttcatttgttgcttacccatgcagGAACTCCTTGTTTCCGTGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA07G31840.3 (Glycine max), 3'ss of exon 3
-----gtaaaaaggctctatttctattattgactttcggat------attcatgcccttgct------ctgaccatattatgttacttgtat---ggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
     | ||  |   |    ||  | ||   || ||   ||      ||||    || || |      | |||    | |||||  ||| ||    ||||| || ||||| |||||||| ||||| |||||  |||| ||||| || ||||||||||| ||||||||||| ||||| |  || || |||||| | ||| |
tttatgcaatgatttttagctttaactagaaaccttttcattgcaggattctcagccatgtttatttgcagacttgttaatgttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAGTCTGTTCGTGGTTGCATTGTCAGTCCAGATCTCTCTGTTTTGAACCT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
----------------gtaaaaaggctctatttctattattgactttcggatattcatgcccttgct--ctgaccatattat-gttacttgtatgg-cagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
                ||  || |  | | ||  |||    |   |    || ||| |     | |   || |   | || |  ||  ||   ||  |||| || |||||||||||||| ||||| |||||| |||| ||||| ||||| |||||||| ||||| ||||| |||||||  ||||| |||||| | |||||
ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 5
-----------gtaaaaaggctctatttctattattgactttcggata-ttcatgcccttgctctgaccatat-------tatgttacttgtatg-gcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
           ||| |   | | | |   || |  |   |       | || |||   ||| ||  |   ||        | |||| |||   || ||||| || ||||| |||||||| || || |||||  |||| ||||| |||||||||||||| ||||| ||||| |||||||  ||||| |||||| | |||||
agtaaggtcatgtatatttgttttttaggtactgctttttcataaccaatttatgttattggtccaatgttaaatttctgtttgttgcttacctgagcagGAACTCCTTGTTTCCGTGGTTACGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCTGACCTCTCTGTTCTCAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA18G26190.1 (Glycine max), 3'ss of exon 3
------------------------gtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
                         |  |   | | |||      | |   |||||   | |  |    ||   | |     |||| |||||||||     |||| || |||||||||||||| ||||| |||||| |||| || || ||||| |||||||| ||||| ||||| |||||||  ||||| |||||| | |||||
ctttattcattttttaataatgtcatgcatttgttgtatcaggtgtctctgctttcctttgtctacaaactaattttctttttatt-tgttacttg---aacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT5G10360.2 (Arabidopsis thaliana), 3'ss of exon 4
------------------gtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggc-agGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
                   | | ||   | ||   ||  | ||   |||    || || |     |  | |    || | || |   |  | ||   ||| || ||||| ||  | ||  | || ||| |   ||| ||| | ||  | |||||||||||||||||||| || ||||  ||||| |||||| |||||||
gtactagattccaccccattgataaaattatacagcttctctt--tttttcattaatcttctgtgttttttatttatgtgatctggttattgtgtttagGTACTCCTTGTTTTAGAGGACACGGAAGGAGGACTGGAGAGAGGAGACGAAAGTCTGTCCGTGGTTGCATTGTGAGCCCTGACCTGTCTGTTCTTAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------------------------------------------------------gtaaaaaggctctatttctattattgactttcggatattcatgcc-cttgctctgaccatattatgtta----cttgtatgg-cagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
                                                                                                  |   |    | |  ||   || |    ||  | || | |  |   |||| |   || |       ||      |||  ||  ||||||| |||||||||||||| ||||| || ||| |||| ||||| ||||||||| |||| ||||| ||||| || ||||||||||| || ||| | |||||
gttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGATGCATTGTTAGCCAGGACCTCTCAGTTTTGAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------gtaaaaa---ggctctatttcta---ttattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatg-gcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
                            ||||||     | | |    ||   | ||    ||  | |  ||    |  |     | |  | | | | |  ||| | || ||||| || || ||||||||||| ||||| || ||| |||| ||||| ||||||||| |||| ||||| ||||| |||||||| ||||| |||||| | |||||
gtgagtaaactgggactgttctaatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttat-gcttatttgagcagGTACCCCATGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGGTGCATTGTCAGCCAAGACCTCTCTGTTTTGAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------------------------------gtaaaaaggctctatttctattattgactttcggatattcat-gcccttgctctgaccatattatgttacttgtat---ggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
                                                                         || | |||  | | || |||  |     ||| |     |  |      || |      | | | |  || || |      ||||| || |||||||| || || ||||| |||||| |||| ||| | ||||||||| |||| ||||| ||||| |||||||||||||| |||||| | |||||
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT

upper sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 3
gtaaaaaggctctatttctattattgactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
|||||| |   ||  || | |       ||||      ||   |  | | |||||        ||  | | ||    |||||    ||||||| |||||||||||  | || ||||||||||| ||||||||||| || ||||||||||| |||||||| || || |||||| | ||  |
gtaaaacgatgcttcttttttc-----ttttc------tccctctttcgttctgatt------tgagattcgtg-accagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGAAGTCAGTTCGTGGTTGCATTGTCAGCCATGATCTGTCTGTTCTCAATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682891|gb|CB679166.1|CB679166
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|218498560|gb|FG955781.1|FG955781
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|218504172|gb|FG954522.1|FG954522
EST:     GAAGCA-GGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|58675684|gb|CK064371.1|CK064371
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|86594662|gb|CI255738.1|CI255738
EST:     GGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACC-TGCTGTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGG
genomic: GGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCT-TCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGG
EST: gi|58680867|gb|CK069554.1|CK069554
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|426742|gb|D22814.1|D22814
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|218490056|gb|FG943987.1|FG943987
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|4880943|gb|AU065242.1|AU065242
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|218494399|gb|FG963390.1|FG963390
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|218479219|gb|FG969099.1|FG969099
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
EST: gi|58591861|gb|CF990169.1|CF990169
EST:     CTTCTTCTTCACAGTGT                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGG
genomic: CTTCTTCTTCACAG-GGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGG
EST: gi|29682892|gb|CB679167.1|CB679167
EST:     GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCG-CTTTTTCTTCACAGGG                         GCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA
genomic: GAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 67 (downstream exon)
Score: 173

GGCTATGTCTTCAAGATCATGGGGGGTTGTGACAAGCAGGGTTTCCCTATGAAGCAGGGAGTGCTCACTGCTGGACGTGTCCGCCTTCTTCTTCACAGGGgtaaaaaggc ... tgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactttcggatattcatgcccttgctctgaccatattatgttacttgtatggcagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT
                                atattatgttactt  TA-rich tract