1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcgaattacttaatactctgtttacatgatcacattctaaatgcatgcattccatagaaagaaaactaccttgtaaccaaatgcaacgtgctctcgtttgatgttttatcgggttcttgcctaacccttaaagttctcacatgttgatatttattctcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGAACAAGGCAGTGCACCAGTCCCAGCGGCAGCACCCACCCCTAACTGGGG
species | Oryza sativa |
transcript | LOC_Os07g42450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86821489|gb|CI266865.1|CI266865
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86884194|gb|CI311648.1|CI311648
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86543008|gb|CI183214.1|CI183214
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88834094|gb|CI077575.1|CI077575
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86484672|gb|CI127305.1|CI127305
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88956487|gb|CI092733.1|CI092733
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88251331|gb|CI349759.1|CI349759
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGAT-GGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88220892|gb|CI218743.1|CI218743
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|2312443|gb|C28598.1|C28598
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGNATGGEST: gi|86250890|gb|CI007753.1|CI007753
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGG-ATGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|94362534|gb|CI052653.1|CI052653
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86540460|gb|CI180666.1|CI180666
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|58681997|gb|CK070684.1|CK070684
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGG TEST: gi|58681997|gb|CK070684.1|CK070684
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCA-Ggtcgaattac ... tcaattgcag-
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGG TEST: gi|58681997|gb|CK070684.1|CK070684
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCA-Ggtcgaattac ... tcaattgcag-
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGG TEST: gi|86854236|gb|CI254181.1|CI254181
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCA-Ggtcgaattac ... tcaattgcag-
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|87038852|gb|CI193474.1|CI193474
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86255009|gb|CI017129.1|CI017129
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGCGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88241737|gb|CI241586.1|CI241586
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88219054|gb|CI220614.1|CI220614
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|89175022|gb|CI041100.1|CI041100
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88218884|gb|CI216882.1|CI216882
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: GCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88847336|gb|CI011279.1|CI011279
genomic: GCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88205881|gb|CI205730.1|CI205730
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGTCCCTGCCCCTGGATGGGEST: gi|88838973|gb|CI012849.1|CI012849
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86434559|gb|CI105792.1|CI105792
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|87038900|gb|CI193522.1|CI193522
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88834464|gb|CI077747.1|CI077747
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|89197054|gb|CI021894.1|CI021894
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88490166|gb|CI427438.1|CI427438
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86530972|gb|CI171178.1|CI171178
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86434604|gb|CI105837.1|CI105837
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88984221|gb|CI020139.1|CI020139
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|218498639|gb|FG958416.1|FG958416
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|87028612|gb|CI266011.1|CI266011
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|88967652|gb|CI016167.1|CI016167
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86418716|gb|CI053517.1|CI053517
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86426237|gb|CI071334.1|CI071334
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|8857538|gb|AU094856.1|AU094856
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86527837|gb|CI168043.1|CI168043
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGEST: gi|86854195|gb|CI254140.1|CI254140
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
EST: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAG CTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
genomic: ACCTGCTGCCATTCCAGCACAGGCTGGTGCTGACTGGACTGCTGCTCCAGgtcgaattac ... tcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGG
ggttcttgcctaacccttaaagttctcacatgttgatatttattctcaattgcagCTCCTGCAGCCGGAGGATGGGACACGGCTGCTGCCCCTGCCCCTGGATGGGAACAAGGCAGTGCACCAGTCCCAGCGGCAGCACCCACCCCTAACTGGGG
tttattctc CT-rich tract
atatttattctcaatt TA-rich tract