1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aacaagggcactgccaagtgcatattctgcttaaaagttctttgtaaaaaatgtataacgaatactatcttaccagaagtttttttttttttaatgatagGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATG
species | Oryza sativa |
transcript | LOC_Os07g40700.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATC GGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGEST: gi|58676447|gb|CK065134.1|CK065134
genomic: CAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCgtaagtgtct ... ttaatgatagGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAG
EST: CAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATC GGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGEST: gi|29661428|gb|CB657703.1|CB657703
genomic: CAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCgtaagtgtct ... ttaatgatagGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAG
EST: CAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATC GGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGEST: gi|88829668|gb|CI074538.1|CI074538
genomic: CAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCgtaagtgtct ... ttaatgatagGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAG
EST: TCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATC GGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGEST: gi|33674842|gb|CF303081.1|CF303081
genomic: TCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCgtaagtgtct ... ttaatgatagGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAG
EST: CAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATC GGTCATCATGGTGATCTCTTGCCTGA
genomic: CAGCTGGAATCCTTATGCACCATGCTGTCTGTGATCGAATTTCCCGCATCgtaagtgtct ... ttaatgatagGGTCATCATGGTGATCTCTTGCCTGA
aaaaaatgtataacgaatactatcttaccagaagtttttttttttttaatgatagGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATG
ttttaat putative branch site (score: 5)
tttttttttttttaat CT-rich tract
agaagttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaagggcactgccaagtgcatattctgcttaaaagttctttgtaaaaaatgtataacgaatactatcttaccagaagtttttttttttttaatgatagGGTCATCATGGTGATCTCTTGCCTGAAGAAAGTAGAATATTGCTTGCGGAGTTTTATTTGCGCCACAGACAGAGCACAGCTGGCATAGTTCACGAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - -actgcca
- - - - - - - - -gtgcata
- - - - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -accagaa