1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caactaaggattctgttttacataaaccataaaatactgtagaaattagaaattcctgtcggaatggtgcttatttatcttggtaaatgttcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTTCCAAATTTTGACATTGCATCAGATGCTTCTGCGACCTTTAAG
species | Oryza sativa |
transcript | LOC_Os07g39630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTEST: gi|58695257|gb|CK083944.1|CK083944
genomic: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
EST: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTEST: gi|58654938|gb|CK043618.1|CK043618
genomic: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
EST: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATNGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTEST: gi|29664684|gb|CB660959.1|CB660959
genomic: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
EST: AAGTATTGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTEST: gi|58663168|gb|CK051854.1|CK051854
genomic: AAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
EST: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTEST: gi|66915714|gb|CX102562.1|CX102562
genomic: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
EST: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTEST: gi|58674983|gb|CK063670.1|CK063670
genomic: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
EST: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTEST: gi|29629034|gb|CB634045.1|CB634045
genomic: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
EST: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTEST: gi|218480403|gb|FG949018.1|FG949018
genomic: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
EST: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAG GTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
genomic: CATTACGGCTCTATGCTGAGGGAATGTATTCGCCACCAAAGTATTGCAAGgtgacattac ... tcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACT
ttagaaattcctgtcggaatggtgcttatttatcttggtaaatgttcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTTCCAAATTTTGACATTGCATCAGATGCTTCTGCGACCTTTAAG
ttcactc CT-rich tract
ttatttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caactaaggattctgttttacataaaccataaaatactgtagaaattagaaattcctgtcggaatggtgcttatttatcttggtaaatgttcactcacagGTACGTTTTAGAGTCTGACCACATGAAGAAGTTCTTTGACTATATACAACTTCCAAATTTTGACATTGCATCAGATGCTTCTGCGACCTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
caactaa
- - - - gattctg
- - - - - - - - - - - -aaaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggtgc