1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taagctctctagcctttaggatcatcggtttgtttcttgaacttttacaccatagatgctagtattctagtcaaatattaacgtttaattgcttccctagGGTATTGTCAGGGGCAAATTGGATCAGCTGCGGAGGTGTTTTGAG
species | Oryza sativa |
transcript | LOC_Os07g30840.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCAATGTAAGAGAACTCGAAGATTTCCTCATCAATGAGTGCATGTACTCG GGTATTGTCAGGGCCAAATTGGATCAGCTCCGGAGGTGTTTTGAG
genomic: CCAATGTAAGAGAACTCGAAGATTTCCTCATCAATGAGTGCATGTACTCGgtgagaattt ... gcttccctagGGTATTGTCAGGGGCAAATTGGATCAGCTGCGGAGGTGTTTTGAG
tacaccatagatgctagtattctagtcaaatattaacgtttaattgcttccctagGGTATTGTCAGGGGCAAATTGGATCAGCTGCGGAGGTGTTTTGAG
ttgcttccct CT-rich tract
aaatattaacgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagctctctagcctttaggatcatcggtttgtttcttgaacttttacaccatagatgctagtattctagtcaaatattaacgtttaattgcttccctagGGTATTGTCAGGGGCAAATTGGATCAGCTGCGGAGGTGTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC