1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acacaaaaaaatatttagtttttcgtcaactgtaggttctgtcatgagctttctttacagagcacaaatgatgtgtagactaacagtcttgtcatttcagTTGATGCTGGAGAACGAGAGAACCATGAAGCCACCTGAGACGCAAAGAATGGACGATGAAATCGCCATCGAGAGGGATCATGATGAGGAGCAGAAGGCGG
species | Oryza sativa |
transcript | LOC_Os07g29794.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGATCATGCTATTATCTGGATCGAAAGAGAAGCTCAAAGGGGACTAGAT TTGATGCTGGAGAACGAGAGAACCATGAAGCCACCTGAGACGCAAAGAATG
genomic: CTGATCATGCTATTATCTGGATCGAAAGAGAAGCTCAAAGGGGACTAGATgtaagtctga ... gtcatttcagTTGATGCTGGAGAACGAGAGAACCATGAAGCCACCTGAGACGCAAAGAATG
gagctttctttacagagcacaaatgatgtgtagactaacagtcttgtcatttcagTTGATGCTGGAGAACGAGAGAACCATGAAGCCACCTGAGACGCAAAGAATGGACGATGAAATCGCCATCGAGAGGGATCATGATGAGGAGCAGAAGGCGG
gactaac putative branch site (score: 17)
tcttgtc putative PPT
ttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacaaaaaaatatttagtttttcgtcaactgtaggttctgtcatgagctttctttacagagcacaaatgatgtgtagactaacagtcttgtcatttcagTTGATGCTGGAGAACGAGAGAACCATGAAGCCACCTGAGACGCAAAGAATGGACGATGAAATCGCCATCGAGAGGGATCATGATGAGGAGCAGAAGGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- -caaaaaa
- - - - - - - - - - - - - - - - - ggttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaca