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...ttccacaatttcaatcagtcttttcttcacaactttcttacttctctgcttaacaagtaaagatctgccaaatattcatttatgacaattcatgatgtagATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAG
species | Oryza sativa |
transcript | LOC_Os07g26610.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGG ATTGGCTTCAACACCAGCAATGTT-AACAGTACACTTEST: gi|88392307|gb|CI612781.1|CI612781
genomic: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGGgtgagttgaa ... catgatgtagATTGGCTTCAACACCAGCAATGTTCAACAGTACACTT
EST: GCAGTTACTCTTGGAATTACCACTGGAGGGCATGATGTTTTACAATTTGG ATTGGCTTCAAAACCAGCAATGTEST: gi|33793170|gb|CF322466.1|CF322466
genomic: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGGgtgagttgaa ... catgatgtagATTGGCTTCAACACCAGCAATGT
EST: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGG ATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGATEST: gi|88298548|gb|CI563543.1|CI563543
genomic: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGGgtgagttgaa ... catgatgtagATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGAT
EST: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGG ATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGATEST: gi|29660678|gb|CB656953.1|CB656953
genomic: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGGgtgagttgaa ... catgatgtagATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGAT
EST: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGG ATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGAT
genomic: GCAGTTACTCTTGGAATTACCACTGCAGGGCATGATGTTTTACAATTTGGgtgagttgaa ... catgatgtagATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGAT
ctgcttaacaagtaaagatctgccaaatattcatttatgacaattcatgatgtagATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAG
gcttaac putative branch site (score: 3)
aaatattcatttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccacaatttcaatcagtcttttcttcacaactttcttacttctctgcttaacaagtaaagatctgccaaatattcatttatgacaattcatgatgtagATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - cttcaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -caagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgcca