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gtctgttagttgtccctattgcatgatatttttgtgaaaaaaaattattcttatcttttcattttgagttaatttattttgcagAAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG
species | Oryza sativa |
transcript | LOC_Os07g25710.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACCATTTATCATGTTAAAAGTCACCTTCAG AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGEST: gi|88272430|gb|CI386285.1|CI386285
genomic: GACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagt ... tattttgcagAAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG
EST: TAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAG AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGEST: gi|58685772|gb|CK074459.1|CK074459
genomic: TAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagt ... tattttgcagAAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG
EST: TAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAG AAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAGEST: gi|58669237|gb|CK057923.1|CK057923
genomic: TAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagt ... tattttgcagAAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG
EST: TAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAG AAATACAGAACAGCTCG
genomic: TAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagt ... tattttgcagAAATACAGAACAGCTCG
ttttgtgaaaaaaaattattcttatcttttcattttgagttaatttattttgcagAAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG
agttaat putative branch site (score: 26)
tttatttt CT-rich tract
aaaaaaaattattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttagttgtccctattgcatgatatttttgtgaaaaaaaattattcttatcttttcattttgagttaatttattttgcagAAATACAGAACAGCTCGATACAGACCAGAATTGTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG