Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttacctaaaaatggtttttatttttttcaattttgttaaaccactctacatttggaatttccccatttttgtttttttttaactgaaaaaataatgcagAGGAGTACGACGAGGAGAGCGCGGTGGCGCACGTACGGCGGCTGCTTGACATCGTCGCCTGCACCGCCTCCTTCGGTCCGCCGCCCCCGCCGCCGCCGCC

Basic information

species Oryza sativa
transcript LOC_Os07g23990.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g23990.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G046209_T01 (Zea mays), 3'ss of exon 5
tttacctaaaaatggtttttatttttttcaa---ttttgttaaaccactctacatttggaatttccccatttttgtttttttttaactgaaaaaataatgcagAGGAGTACGACGAGGAGAGCGCGGTGGCGCACGTACGGCGGCTGCTTGACATCGTCGCCTGCACCGCCTCCTTCGGTCCGCCGCCCCCGCCGCCGCCGCC
| ||  | | |  | || | ||      |||   | | | |  ||  |||| |   |||     || |     | | |  |  ||| | |   || |||||||||||||||  ||||||||||||||| | ||| || ||||| ||||| ||||||||||| |||||| ||| |||||| ||  |||| || || || || ||
tataatttagagagattataatccgaaacaaacgtgtcgctccactgctctccgcctgg--ccgcctcggacatatatagtaataa-taatttaaaaatgcagAGGAGTACAGCGAGGAGAGCGCGGTCGAGCATGTCCGGCGTCTGCTGGACATCGTCGCTTGCACCACCTGCTTCGGCCCAGCGCCGCCACCTCCTCCTCC

upper sequence: LOC_Os07g23990.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 3'ss of exon 5
-------------------------------------------------------------tttacctaaaaatggtt-tttatttttttcaattttgttaaaccactctacatttggaatttcccc---atttttgtttttttttaactgaaaaaataatgc-agAGGAGTACGACGAGGAGAGCGCGGTGGCGCACGTACGGCGGCTGCTTGACATCGTCGCCTGCACCGCCTCCTTCGGTCCGCCGCCCCCGCCGCCGCCGCC
                                                                |||||||    |   ||| | ||| ||         |   |||| ||| ||||    ||  |    |||  ||      ||    |       |  ||| |||||| ||| | || |  |  || |||||||||||  | ||||||||||||||||||||||| ||| | | |||||||||| ||||   |    |     |
gtaaacttctctcgcgcatcaaatatgacgccgttactgcgccgtaacggaaataacttagaaaacctaaacgctgccgtttctatttatctgccaaacgacgtcactttacttttgtgccttttctttaattcgtgagaccgttgtgatttctttttgttgccagAGGATTACAATGAAGGAACAGCAGTGGCGCACGTTAGACGGCTGCTTGACATCGTCGCCTGTACCACTTGCTTCGGTCCGTCGCCGGAGAAATCAGACTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacatttggaatttccccatttttgtttttttttaactgaaaaaataatgcagAGGAGTACGACGAGGAGAGCGCGGTGGCGCACGTACGGCGGCTGCTTGACATCGTCGCCTGCACCGCCTCCTTCGGTCCGCCGCCCCCGCCGCCGCCGCC
                                ttttaac  putative branch site (score: 2)
                    atttttgttttttttt  TA-rich tract