1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttagggatgccccactaagctatgttttgtttagcatcttgatcatgttaatgcaatactaaataactgagacatcacgttttgtcatgttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATCTTCGTTGGGGTGGTGATCCAAGCATAATCCTTGCTGTTGATGCTGTTGT
species | Oryza sativa |
transcript | LOC_Os07g22640.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAG GTATTCGCATTCAAAATATTCAGCCACGCCACATCATAATGGATATAGATCEST: gi|29624991|gb|CB630002.1|CB630002
genomic: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGgttttcctat ... ttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATC
EST: TCTGAAGTTCAGCAAATTCTCTCTTGGACCTGTTTCACCAAAGATAGAAG GTATTCGCATTCAAAATATTCAGCCAGGCCAAATTATAATGGATATAGATCEST: gi|86904903|gb|CI310696.1|CI310696
genomic: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGgttttcctat ... ttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATC
EST: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAG GTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATCEST: gi|44674448|gb|CR287882.1|CR287882
genomic: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGgttttcctat ... ttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATC
EST: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAG GTATTCGCATTCAAAATATTCAGCCAGGCCAAATTATAATGGATATAGATCEST: gi|29630138|gb|CB635147.1|CB635147
genomic: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGgttttcctat ... ttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATC
EST: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAG GTATTCGCATTCAAAATATTCAGCCAGGCCAAATTATAATGGATATAGATCEST: gi|58606676|gb|CK034709.1|CK034709
genomic: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGgttttcctat ... ttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATC
EST: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAG GTATTCGCATTCAAAATATTCAGCCAGGCCAAATTATAATGGATATAGATCEST: gi|29662931|gb|CB659206.1|CB659206
genomic: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGgttttcctat ... ttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATC
EST: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAG GTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATCEST: gi|29624993|gb|CB630004.1|CB630004
genomic: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGgttttcctat ... ttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATC
EST: TCTGAAGTTCAGCAAATTCTCTCTTGGACCTGTTTCACCAAAGATAGAAG GTATTCGCATTCAAAATATTCAGCCAGGCCAAATTATAATGGATATAGATC
genomic: TCTGAAGTTCAGCAAATTCTCTCTTGGAACTGTTTCACCAAAGATAGAAGgttttcctat ... ttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATC
atgttaatgcaatactaaataactgagacatcacgttttgtcatgttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATCTTCGTTGGGGTGGTGATCCAAGCATAATCCTTGCTGTTGATGCTGTTGT
aatactaaataact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttagggatgccccactaagctatgttttgtttagcatcttgatcatgttaatgcaatactaaataactgagacatcacgttttgtcatgttgtgtaaagGTATTCGCATTCAAAATATTCAGCCAGGCCAAATCATAATGGATATAGATCTTCGTTGGGGTGGTGATCCAAGCATAATCCTTGCTGTTGATGCTGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT