Sequence
atgc intronic sequence ATGC exonic sequencegtgactttctgtccttttcttgcatacaaggaaagctatcatgctttaaccgttccttgccacactgtatttttcagAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAG
Basic information
species | Oryza sativa |
transcript | LOC_Os07g22400.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g22400.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G044317_T04 (Zea mays), 3'ss of exon 4
gtgactttctgtccttttcttgcata-----caaggaaagcta--------tcatgctttaaccgttccttgc--cacactgtatttttcagAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAG
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gtgacttcctatccatttaccatagaactgacaaaggaaaataatatgcatttatgctttaactgttgcttgttgcacatcatctgtttcagAGGATGCTTATGACTGAGTTTCAATTGCCGTATAAAGCACTGCCATACTCAGAGTTTGAG
upper sequence: LOC_Os07g22400.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G130351_T01 (Zea mays), 3'ss of exon 4
gtgactttctgtccttttcttgcatac------aaggaaagctatc-------atgctttaaccgttccttgccacactgtattt--ttcagAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAG
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gtgattttctataaatttatcatagaactgacaaaggaaaacaatttgtgtttatgctttaactgttgcttgttgcacaacatctgtttcagAGGATGCTTATGACTGAGTTTCAACTGCCATACAAAGCATTGCCACACTCAGAATTCGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58665435|gb|CK054121.1|CK054121EST: AGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAG AGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCG
genomic: AGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAGgtgactttct ... tatttttcagAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catacaaggaaagctatcatgctttaaccgttccttgccacactgtatttttcagAGGATGCTTATGAGTGAGTTTCGACTTCCATACAAAGCATTGCCACACTCGGAATTTGAG
ctttaac putative branch site (score: 3)
tatttttc putative PPT
tgtattttt TA-rich tract