1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atgtatatgtatgtattgtatacatagacatatctctggcttctgttgatatctttgttgtcatacaggttgacttaattttggtttgttcttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGAT
species | Oryza sativa |
transcript | LOC_Os07g17400.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTG GTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATEST: gi|25044736|gb|AJ420719.1|AJ420719
genomic: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagta ... cttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAAT
EST: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTG GTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATEST: gi|33824207|gb|CF337916.1|CF337916
genomic: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagta ... cttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAAT
EST: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTG GTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATEST: gi|86871012|gb|CI326831.1|CI326831
genomic: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagta ... cttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAAT
EST: TGTGCATAAAAT-CTACA-GGACTG GTATAGAAGATCAGAGTCTTGCCCTTTCTGCCAAGGAAGCCTTAAACGAATEST: gi|27546579|gb|CA767256.2|CA767256
genomic: TGTGCATAAAATGCTACAGGGACTGgtaaatagta ... cttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAAT
EST: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTG GTGTAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATEST: gi|33684777|gb|CF313016.1|CF313016
genomic: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagta ... cttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAAT
EST: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTG GTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATEST: gi|86824946|gb|CI358149.1|CI358149
genomic: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagta ... cttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAAT
EST: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTG GTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACG-AT
genomic: GTTCTGCCTAATTGCAGTCATGCAATGTGCATAAAATGCTACAGGGACTGgtaaatagta ... cttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAAT
ttgatatctttgttgtcatacaggttgacttaattttggtttgttcttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGAT
acttaat putative branch site (score: 16)
tttgttcttcttgt putative PPT
acttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtatatgtatgtattgtatacatagacatatctctggcttctgttgatatctttgttgtcatacaggttgacttaattttggtttgttcttcttgtagGTATAGAAGATCAGAGTCTTGCCCTTTCTGCCGAGGAAGCCTTAAACGAATTCGCTCAAGAGACCTGTGGGTGCTCACAAATTACAATGATGTGGTTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - atgtatg
- - - - - - - - - - - - - - - - - - - gcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacag