1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcatctttgtgtgttcttgttcctaatgtttcataatgaccatgcatggatgtgtggctataactattctttgtgtggttgattcgtgatgactctgcagGTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGGACGCAAATCTGCGGTTTTACGGCGACCCGTATCTGACAACCAGCGATAT
species | Oryza sativa |
transcript | LOC_Os07g17130.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAG GTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGGEST: gi|58597700|gb|CK008228.1|CK008228
genomic: AGCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAGgtaatctttc ... gactctgcagGTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGG
EST: AGCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAG GTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGGEST: gi|88273016|gb|CI388472.1|CI388472
genomic: AGCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAGgtaatctttc ... gactctgcagGTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGG
EST: TTGTTATACATATAGCTGCAGCAAAG GTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACACCGAAGGEST: gi|88266609|gb|CI377511.1|CI377511
genomic: TTGTTATACATATAGCTGCAGCAAAGgtaatctttc ... gactctgcagGTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAAC-CCGAAGG
EST: AGCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAG GTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGG
genomic: AGCTGGTGATAAAGGCTCAGGTGTTTGTTATACATATAGCTGCAGCAAAGgtaatctttc ... gactctgcagGTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGG
atggatgtgtggctataactattctttgtgtggttgattcgtgatgactctgcagGTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGGACGCAAATCTGCGGTTTTACGGCGACCCGTATCTGACAACCAGCGATAT
tataactattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatctttgtgtgttcttgttcctaatgtttcataatgaccatgcatggatgtgtggctataactattctttgtgtggttgattcgtgatgactctgcagGTGCATTCATTGGTGTTTCGTTGGAAGGGAACTTCGTTGCAACCCGAAGGGACGCAAATCTGCGGTTTTACGGCGACCCGTATCTGACAACCAGCGATAT
- - - - - - gttcttg
- - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - tgcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg