Sequence
atgc intronic sequence ATGC exonic sequencegtatgcacttcgagctttgtcattcgatctggatgtgaacttttattttaagtctcatagcttgtctttctttcattatgtagGAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAG
Basic information
species | Oryza sativa |
transcript | LOC_Os07g16950.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os07g16950.3 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G461793_T01 (Zea mays), 3'ss of exon 3
gtatgcacttcgagctttgtcattcgatctggatgtgaactttta--ttttaagtctcatagcttgtctttctttcattatgtagGAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAG
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gtatgcatctctagctaacgtatactgtttctccttaaaatttagagtatttggtctaattttttttggcttttttgtcattaagGAATTTTGGCCTAAGCTACTTGTGCACAAGATCAAACAGCGGCTGACAAAAATGACTCAATATCGTATAAGAATGAGGAAACTTCAACTGAAAGTGAG
upper sequence: LOC_Os07g16950.3 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv14s0030g01480.t01 (Vitis vinifera), 3'ss of exon 13
-------------gtatgcacttcga--gctttgtcattcgatctggatgtgaacttttatttta----agtctcatagcttgtctttctttcattatg-tagGAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAG
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gtattctacttctccttgcaatttcatagggtttttgtttcctctttatcgaagtttttggaggacaccggttgcttaatctatatttatttggttttaacagATGTTTTGGCCGAAGTTGCTTGTTCACAAAACAAAGCAGCGTCTCACTAAAATGACTCAGATGCGAATTCGCATGAGGAAGCTTGCATTGAAAACAAG
upper sequence: LOC_Os07g16950.3 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv17s0000g09220.t01 (Vitis vinifera), 3'ss of exon 4
-------------gtatgcacttcgagct--ttgtcattcgatctggatgtgaacttttatttta----agtctcatagcttgtctttctttcattatg-tagGAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAG
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gtattctacttctccttgcaatttcatatggtttttgtttactcttcatcgaagtttttggaggacaccagttgcttaatctatatttatttggttttaacagATGTTTTGGCCGAAGTTGCTTGTTCACAAAACAAAGCAGCGTCTCACTAAAATGACTCAGATGCGAATTCGCATGAGGAAGCTTGCATTGAAAACAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|427797|gb|D23935.1|D23935EST: GAAATTATGAGAAAGCAATGGAAGTCATCAATAAGCATCTT GAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAA
genomic: GAAATTATGAGAAAGCAATGGAAGTCATCAATAAGCATCTTgtatgcactt ... cattatgtagGAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggatgtgaacttttattttaagtctcatagcttgtctttctttcattatgtagGAATTTTGGCCCAAGTTACTTGTGCACAAAATTAAGCAGCGCCTGACAAAAATGACTCAGTATCGGATAAGAATGAGGAAGCTTCAACTGAAAGTGAG
cttgtctttctttcat CT-rich tract
tgaacttttattttaa TA-rich tract