Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaatctgttttatagccattgcctgatgtcatgtgccggagatacagtttgacagtacatattatataatggttttgccattgcatgtctagttaacattgtctcttaaacatggcctttctcttctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAAGCTGCCAGGGAGATCTCTCATA

Basic information

species Oryza sativa
transcript LOC_Os07g15880.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g15880.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G145964_T01 (Zea mays), 3'ss of exon 1
gtaagaaatctgttttatagccattgcctgatgtcatgtgccggagatacagtttgacagtacatattatataatggttttgccattgcatgtctagttaacattgtctcttaaacatggcctttctcttctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAAGCTGCCAGGGAGATCTCTCATA
                               ||  ||||    |   |   |||   |   || | |     ||   || |    ||   |  ||    |||| | |||  |     |||    ||| | || | ||||||| || ||||| ||||| |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| || |
-------------------------------tgctatgttgatgcccttgtgttgagctaaacctttccctgaaacattatctgcttctttccctga--aacactatctgct---tctgg----tctgtgctgtgaacagGGAGAGGCTAAGAGTGCGGAGCTGATTGGTCAAGCCATAGCGAACAACCCTGCCTTCCTTGCCCTGAGGCAGATTGAAGCTGCAAGGGAGATCTCCCACA

upper sequence: LOC_Os07g15880.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G352289_T01 (Zea mays), 3'ss of exon 3
gtaagaaatctgttttatagccattgcctgatgtcatgtgccggagatacagtttgacagtacatattatataatggttttgccattgca-tgtctagttaacattgtctcttaaacatggcctttctcttctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAAGCTGCCAGGGAGATCTCTCATA---------------------
                                                    ||| | | |   |  | |  |  ||    | || |  | |  | |  |   |||   || ||   || |   |  | | |||       | ||| | ||   |||| |||||||||||||||||||| || ||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| ||                       
---------------------------------------------------atttta-aatttgtcgtgtgaagcggagccggcagtaaaatcacaaaatcgaatttattcctag--attgtactagtatcctt-------gttgatgttatt-gtgcggagCTGATTGGTCAAGCCATAGCGAACAATCCTGCCTTCCTTGCGCTGAGGCAGATCGAAGCTGCAAGGGAGATCTCACACGCGATTTCGGCCTCTGCCAACA

upper sequence: LOC_Os07g15880.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GLYMA12G01850.1 (Glycine max), 3'ss of exon 4
gtaagaaatctgttttatagccattgcctgatgtcatgtgccggaga-tacagtttgacagtacatattatataatggttttgccattgcatgtctagttaacattgtctcttaaacatggcctttctcttctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAAGCTGCCAGGGAGATCTCTCATA
                  | |||| |  |  | | || | |   ||| |||||      ||  |   || || ||        | ||||  | | ||  ||||  | |  |||        || |||| ||     |||||||||||||||| |||||  || ||||||||||||| ||||| || || ||||| ||  |  || | ||| | || |||||||| ||||| ||| |||| |
------------------atccatag--tacttttatctacaaaagaatacag------agggctgtttttacaact------ctattgtttatgtatataac-ctattcctt--------cccttctttttaacaaacagGGTGAAGCTAAGAGTGCCCAGTTGATTGGTCAAGCTATTGCCAATAATCCTGCGTTTATCACCTTAAGGAAAATTGAAGCTGCAAGGGAAATCGCTCAGA

upper sequence: LOC_Os07g15880.1 (Oryza sativa), 3'ss of exon 4
lower sequence: AT4G28510.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaagaaatctgttttatagccattgcctgatgtcatgtgccggagatacagtttgacagtacatattatataatggttttgccattgcatgtctagttaacattgtctcttaaacatggcctttctcttctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAAGCTGCCAGGGAGATCTCTCATA
                                               || ||     |  ||||| |    |  |  | |   |  ||   |        | |||||    | |  |  |  ||    |   ||    |||| ||||| || |||||| |||| ||||||||||| |||||||||||||  || ||  |  | |||||| ||||||| ||||| || |||||  | || |
----------------------------------------------gtaaagagattctctacatttccacttgtaatctaaactctgagagc------gaaattgttgtgtgacgaaag--ttcacatggcttgtgtagGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAGCGTTTATCACGCTCAGGAAGATCGAGGCTGCAAGAGAGATTGCACAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86507097|gb|CI149730.1|CI149730
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|33802225|gb|CF326985.1|CF326985
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCC
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAA-CCC
EST: gi|55431838|gb|CV728939.1|CV728939
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|88218537|gb|CI218386.1|CI218386
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86498079|gb|CI140712.1|CI140712
EST:     TGTTGAGAAAGCTGAGCAAGACCAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCC
genomic: TGTTGAGAAAGCTGAGCAAGA-CAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAA-CCC
EST: gi|88844979|gb|CI022333.1|CI022333
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|88836741|gb|CI014742.1|CI014742
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|218492050|gb|FG952147.1|FG952147
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|88908212|gb|CI090807.1|CI090807
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|58594640|gb|CF992948.1|CF992948
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|58693615|gb|CK082302.1|CK082302
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|33803699|gb|CF327724.1|CF327724
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|58679763|gb|CK068450.1|CK068450
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86493661|gb|CI136294.1|CI136294
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86525908|gb|CI166114.1|CI166114
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86594738|gb|CI255814.1|CI255814
EST:     TGTTGAGAAAGCTGAGCAAGACCAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TGTTGAGAAAGCTGAGCAAGAC-AAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|33803697|gb|CF327723.1|CF327723
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|58679641|gb|CK068328.1|CK068328
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86594799|gb|CI255875.1|CI255875
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86546629|gb|CI186835.1|CI186835
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|87018317|gb|CI265609.1|CI265609
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|88828385|gb|CI073255.1|CI073255
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|218494609|gb|FG957575.1|FG957575
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCACACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|58593517|gb|CF991825.1|CF991825
EST:     TTGTTGAGAAAGCTGAGCAAGACCAGAGGAGTGCGATTATCAGGGCCCAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCCTTGCCAACCACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|89180747|gb|CI009655.1|CI009655
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|8335502|gb|BE040419.1|BE040419
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|88202461|gb|CI200816.1|CI200816
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|88206230|gb|CI206079.1|CI206079
EST:     TTGGTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|117233393|gb|CT848123.1|CT848123
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86505387|gb|CI148020.1|CI148020
EST:     GACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: GACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|218488311|gb|FG953544.1|FG953544
EST:     TTGTTGAGAAAGCTGAGCCAGACNAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCCTTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86546569|gb|CI186775.1|CI186775
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86869100|gb|CI335667.1|CI335667
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|11118161|gb|AU163349.1|AU163349
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|55431840|gb|CV728940.1|CV728940
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|88202555|gb|CI200910.1|CI200910
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|58599849|gb|CK010377.1|CK010377
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|8335500|gb|BE040418.1|BE040418
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|88491723|gb|CI428995.1|CI428995
EST:     TTNTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTNAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86592368|gb|CI251022.1|CI251022
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|58694784|gb|CK083471.1|CK083471
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|218489869|gb|FG943959.1|FG943959
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAACCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86537611|gb|CI177817.1|CI177817
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTATAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86540203|gb|CI180409.1|CI180409
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|218492453|gb|FG950899.1|FG950899
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86822016|gb|CI357743.1|CI357743
EST:     GCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: GCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86535669|gb|CI175875.1|CI175875
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|218497361|gb|FG953033.1|FG953033
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|89163189|gb|CI100079.1|CI100079
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|58695603|gb|CK084290.1|CK084290
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|86543279|gb|CI183485.1|CI183485
EST:     GTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: GTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|89178541|gb|CI015246.1|CI015246
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCCGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
EST: gi|22306781|gb|BQ908003.1|BQ908003
EST:     GCTGAGCNAGACNAGAGGAGTGCGATTATCAGGGCACCAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCC
genomic: GCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCA-CAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCC
EST: gi|218481986|gb|FG957221.1|FG957221
EST:     TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAG                         GGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT
genomic: TTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 70 (downstream exon)
Score: 69

TATTGAAGCCAAACAGGTTGCTGCACAAGAAGCTGAGCGTGCTAAGTTCATTGTTGAGAAAGCTGAGCAAGACAAGAGGAGTGCGATTATCAGGGCACAGgtaagaaatc ... ctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAAGCTGCCAGGGAGATCTCTCATA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcatgtctagttaacattgtctcttaaacatggcctttctcttctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAAGCTGCCAGGGAGATCTCTCATA
          agttaac  putative branch site (score: 69)
                                tggcctttctcttctt  putative PPT
            ttaacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagaaatctgttttatagccattgcctgatgtcatgtgccggagatacagtttgacagtacatattatataatggttttgccattgcatgtctagttaacattgtctcttaaacatggcctttctcttctttcaacagGGTGAAGCTAAAAGTGCTGAGCTGATTGGTCAAGCCATTGCAAACAACCCTGCTTTCCTTGCCCTCAGGCAGATCGAAGCTGCCAGGGAGATCTCTCATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC