1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcataagtttaaggctaaatgatctagtagcaatgtgcttgtttcataagtcgaggcttcacactttcttatattattttttcacttcctgatcgtgaagGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTATTAAAAG
species | Oryza sativa |
transcript | LOC_Os07g14580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAG GATATTGAATGCATTCTCCAAAGCAACTCCGEST: gi|117230076|gb|CT853782.1|CT853782
genomic: TGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGgtaaattcgt ... gatcgtgaagGATATTGAATGCATTCTCCAAAGCAACTCCG
EST: TGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAG GATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTATEST: gi|58690454|gb|CK079141.1|CK079141
genomic: TGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGgtaaattcgt ... gatcgtgaagGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTAT
EST: TGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAG GATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTATEST: gi|66923810|gb|CX110658.1|CX110658
genomic: TGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGgtaaattcgt ... gatcgtgaagGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTAT
EST: TGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAG GATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTAT
genomic: TGGTTTTATAATTCCCAGGAATGCGAAGAAGTTGCAAATCTTTTTAGCAGgtaaattcgt ... gatcgtgaagGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTAT
ataagtcgaggcttcacactttcttatattattttttcacttcctgatcgtgaagGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTATTAAAAG
tcctgat putative branch site (score: 15)
ttttttcacttcctg CT-rich tract
tttcttatattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcataagtttaaggctaaatgatctagtagcaatgtgcttgtttcataagtcgaggcttcacactttcttatattattttttcacttcctgatcgtgaagGATATTGAATGCATTCTCCAAAGCAACTCCGAAGCCAAAGGCTCCCTCTATTAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcac