1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttgtttggaatatagttcaattgtcatgtgtgattctttaggttctaaggggaggttcattcaccggcctgtgatggtttatgatggattggttcgtgctgtgttgttagATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGCACAGGATTTGCAAGGGGGAGCTCAAAGTACCGGGGTGTGACACTGCACA
species | Oryza sativa |
transcript | LOC_Os07g13170.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGACTATGAGGACGACTTGAAGCAG ATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGCEST: gi|58673756|gb|CK062442.1|CK062442
genomic: TGACTATGAGGACGACTTGAAGCAGgttgtttgga ... gtgttgttagATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGC
EST: ACGCGGATATCAACTTTAATCTGAATGACTATGAGGACGACTTGAAGCAG ATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGCEST: gi|29677591|gb|CB673866.1|CB673866
genomic: ACGCGGATATCAACTTTAATCTGAATGACTATGAGGACGACTTGAAGCAGgttgtttgga ... gtgttgttagATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGC
EST: ACGCGGATATCAACTTTAATCTGAATGACTATGAGGACGACTTGAAGCAG ATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGC
genomic: ACGCGGATATCAACTTTAATCTGAATGACTATGAGGACGACTTGAAGCAGgttgtttgga ... gtgttgttagATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGC
ttcattcaccggcctgtgatggtttatgatggattggttcgtgctgtgttgttagATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGCACAGGATTTGCAAGGGGGAGCTCAAAGTACCGGGGTGTGACACTGCACA
tttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtttggaatatagttcaattgtcatgtgtgattctttaggttctaaggggaggttcattcaccggcctgtgatggtttatgatggattggttcgtgctgtgttgttagATGCGCAATTGGACCAAGGAGGAGTTTGTGCACATACTTCGGCGCCAAAGCACAGGATTTGCAAGGGGGAGCTCAAAGTACCGGGGTGTGACACTGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA