1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...actaagtgtgctaaactaactcaagtgtattttgctatgtatttatattccacttattttctaaactttcatactatttgctttgctaattgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATTCCTACGAACTAACCAACTCAAG
species | Oryza sativa |
transcript | LOC_Os07g10490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTG AACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATEST: gi|86885560|gb|CI311765.1|CI311765
genomic: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTGgtatgttcag ... tgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCAT
EST: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTG AACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATEST: gi|88425578|gb|CI569302.1|CI569302
genomic: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTGgtatgttcag ... tgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCAT
EST: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTG AACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATEST: gi|86829576|gb|CI286761.1|CI286761
genomic: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTGgtatgttcag ... tgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCAT
EST: AGTG-AGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTG AACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATEST: gi|29679863|gb|CB676138.1|CB676138
genomic: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTGgtatgttcag ... tgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCAT
EST: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTG AACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCAT
genomic: AGTGAAGGAGCATACCCATACATTTGTAAATAAAGGAGGCACGATTGGTGgtatgttcag ... tgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCAT
tattccacttattttctaaactttcatactatttgctttgctaattgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATTCCTACGAACTAACCAACTCAAG
tgctaat putative branch site (score: 28)
ttattttctaaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaagtgtgctaaactaactcaagtgtattttgctatgtatttatattccacttattttctaaactttcatactatttgctttgctaattgctatacagAACTTGATTTTCGGTTTCCTGTGGGAGCTCCGTTACATGGTATCCAAGCATTCCTACGAACTAACCAACTCAAG
- - - - - - aaactaa
- - - - - - - - - - - - - - - - tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttg