1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgtttgctgtgcctgtactactctcattccatattttccctgttgcatccctttctttttttttttttggttgacatgttctgtttcactggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCTTTGGACATGTGGAGTCTTGGTTGCATGTTTGCTGGAATG
species | Oryza sativa |
transcript | LOC_Os07g02350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTNCA-G GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTEST: gi|117220732|gb|CT845509.1|CT845509
genomic: CTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTT-CAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACT
EST: CTGAATTCTACCACCCTGGCAAGGAATATAATGTCCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGAATATGACTACTCEST: gi|58686212|gb|CK074899.1|CK074899
genomic: CTGAATTCTACCACCCTGGCAAGGAATATAATGTCC-GTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|29616864|gb|CB621876.1|CB621876
genomic: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|58691077|gb|CK079764.1|CK079764
genomic: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|29663346|gb|CB659621.1|CB659621
genomic: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|29657466|gb|CB653741.1|CB653741
genomic: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: TGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|29662230|gb|CB658505.1|CB658505
genomic: TGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|29662231|gb|CB658506.1|CB658506
genomic: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: AGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|27577759|gb|CB000454.1|CB000454
genomic: AGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|29663347|gb|CB659622.1|CB659622
genomic: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|29661178|gb|CB657453.1|CB657453
genomic: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: TGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCEST: gi|29619982|gb|CB624994.1|CB624994
genomic: TGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
EST: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAG GTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
genomic: GCTGAATTCTACCACCCTGGCAAGGAATATAATGTCCGTGTTGCTTCAAGgtaggggcac ... tggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTC
gcatccctttctttttttttttttggttgacatgttctgtttcactggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCTTTGGACATGTGGAGTCTTGGTTGCATGTTTGCTGGAATG
ggttgac putative branch site (score: 57)
tttcact putative PPT
tttctttttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttgctgtgcctgtactactctcattccatattttccctgttgcatccctttctttttttttttttggttgacatgttctgtttcactggaattcagGTACTTCAAGGGACCTGAGCTTCTTGTTGACTTGCAAGATTATGACTACTCTTTGGACATGTGGAGTCTTGGTTGCATGTTTGCTGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - ttgctgt
- - - - - - cctgtac
- - - - - - - - - - - - -cattcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca