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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccgctggcctcgattcatctattctttcttttcatgtttccagctgacaatatccatgttacacttctttgatcatgttattctccagCTAGTTTGCAGTGGATCCTGTGCTGGCCCTTCAGATGAAATATCTCCTCTGTACTCATTGTGGGCTACATTTGTTGGCCTTTATATTGCTAACTTTGTTG

Basic information

species Oryza sativa
transcript LOC_Os07g01540.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g01540.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G135839_T01 (Zea mays), 3'ss of exon 4
gtaccgctggcctcg-----attcatctattctttcttttcatgtttccagctgacaatatccatgttacacttctttgatcatgttattctccagCTAGTTTGCAGTGGATCCTGTGCTGGCCCTTCAGATGAAATATCTCCTCTGTACTCATTGTGGGCTACATTTGTTGGCCTTTATATTGCTAACTTTGTTG
|||| ||  || ||      ||||||||||| |||||  ||    || |    |   | ||||||||| |||||||||||||||||| |||||||| |||||||||| ||||||||||||||||| || |||||||| |||||| |||||||||| |||||||||||||||||||| ||||| |||||||||||||
gtactgcctgcttctcctttattcatctattatttctagtcgcactttcttaaggtgacatccatgttgcacttctttgatcatgtttttctccagTTAGTTTGCAGCGGATCCTGTGCTGGCCCATCGGATGAAATCTCTCCTTTGTACTCATTATGGGCTACATTTGTTGGCCTCTATATCGCTAACTTTGTTG

upper sequence: LOC_Os07g01540.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 4
gtaccgctggcctcgattcatctattctttcttttcatgtttccagctgacaatatccatgttacacttctttgatcatgttattctc-cagCTAGTTTGCAGTGGATCCTGTGCTGGCCCTTCAGATGAAATATCTCCTCTGTACTCATTGTGGGCTACATTTGTTGGCCTTTATATTGCTAACTTTGTTG
|||||  | |   | ||||    | | ||  | |   ||||   || |  || | |   ||| ||   || ||  |  | ||  | || ||| | | ||| | ||| || ||| ||||  | ||||||||||| |||||  | |||||||| |||||||||||| | ||||| |||||||| |||| ||| |
gtaccattagaagccattc--tgagttttattatgtctgtt---agttctcattttttttgtcacttatcgttattttttttgctttctcagTTGGCTTGTACTGGCTCATGTCCTGGTTCATCAGATGAAATCTCTCCCATATACTCATTATGGGCTACATTTATAGGCCTCTATATTGCCAACTATGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttccagctgacaatatccatgttacacttctttgatcatgttattctccagCTAGTTTGCAGTGGATCCTGTGCTGGCCCTTCAGATGAAATATCTCCTCTGTACTCATTGTGGGCTACATTTGTTGGCCTTTATATTGCTAACTTTGTTG
                                            ttattctcc  CT-rich tract
                                         atgttatt  TA-rich tract