1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttggacaccacttaactgctcatcattctgtttgatattgctattcagctccagttgacttgattgtttaattgttttagGAAGAAGAAGCAAGGGCGAGGAAAGCCAAAGAGGAGGAAGCTGCTGCCTTGGAATTTGAGAAATGGAAAGGAGCCTTCTCAGTTGATGCTGAAGGTACAA
species | Oryza sativa |
transcript | LOC_Os07g01320.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATGAGGAGGAAGAAAGACGAAGAGCGTGAGGCACAAGAGAGACTTATG GAAGAAGAAGCAAGGGCGAGGAAAGEST: gi|218503102|gb|FG960043.1|FG960043
genomic: AAATGAGGAGGAAGAAAGACGAAGAGCGTGAGGCACAAGAGAGACTTATGgttggacacc ... attgttttagGAAGAAGAAGCAAGGGCGAGGAAAG
EST: AATGAGGAGGAAGAAAGCACGAAGAGCGTGAGGCACAAGAGAGACTTATG GAAGAAGAAGCAAGGGCGAGGAAAGCCAAAGAGGAGGAAGCTGCTGCCTTGEST: gi|66917239|gb|CX104087.1|CX104087
genomic: AATGAGGAGGAAGAAAG-ACGAAGAGCGTGAGGCACAAGAGAGACTTATGgttggacacc ... attgttttagGAAGAAGAAGCAAGGGCGAGGAAAGCCAAAGAGGAGGAAGCTGCTGCCTTG
EST: AAATGAGGAGGAAGAAAGACGAAGAGCGTGAGGCACAAGAGAGACTTATG GAAGAAGAAGCAAGGGCGAGGAAAGCAAAAGAGGAGGAAGCTGCTGCCTTGEST: gi|58596966|gb|CK007494.1|CK007494
genomic: AAATGAGGAGGAAGAAAGACGAAGAGCGTGAGGCACAAGAGAGACTTATGgttggacacc ... attgttttagGAAGAAGAAGCAAGGGCGAGGAAAGCCAAAGAGGAGGAAGCTGCTGCCTTG
EST: AAATGAGGAGGAAGAAAGACGAAGAGCGTGAGGCACAAGAGAGACTTATG GAAGAAGAAGCAAGGGCGAGGAAAGCCAAAGAGGAGGAAGCTGCTGCCTTGEST: gi|218488561|gb|FG963885.1|FG963885
genomic: AAATGAGGAGGAAGAAAGACGAAGAGCGTGAGGCACAAGAGAGACTTATGgttggacacc ... attgttttagGAAGAAGAAGCAAGGGCGAGGAAAGCCAAAGAGGAGGAAGCTGCTGCCTTG
EST: AAATGAGGAGGAAGAAAGACGAAGAGCGTGAGGCACAAGAGAGACTTATG GAAGAAGAAGCAAAGGCG
genomic: AAATGAGGAGGAAGAAAGACGAAGAGCGTGAGGCACAAGAGAGACTTATGgttggacacc ... attgttttagGAAGAAGAAGCAAGGGCG
ttctgtttgatattgctattcagctccagttgacttgattgtttaattgttttagGAAGAAGAAGCAAGGGCGAGGAAAGCCAAAGAGGAGGAAGCTGCTGCCTTGGAATTTGAGAAATGGAAAGGAGCCTTCTCAGTTGATGCTGAAGGTACAA
gtttaat putative branch site (score: 44)
ttgtttt CT-rich tract
attgtttaattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggacaccacttaactgctcatcattctgtttgatattgctattcagctccagttgacttgattgtttaattgttttagGAAGAAGAAGCAAGGGCGAGGAAAGCCAAAGAGGAGGAAGCTGCTGCCTTGGAATTTGAGAAATGGAAAGGAGCCTTCTCAGTTGATGCTGAAGGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG