Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcactgacacacatttctgcaacactgtataggtcacagctatataactaacatgctttctctgaacatattgtggtttcaacacctccagGATTTCTAACATATGCGGTAGCAACCTTAGTAGTCGTGGCAGCACTAGTTCTCTTCTTTGAACCTCGATATGGTCAGACAAATATCATGATATATCTGGG

Basic information

species Oryza sativa
transcript LOC_Os06g50180.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g50180.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G461791_T01 (Zea mays), 3'ss of exon 3
gttagtcactgacacacatttctgcaacactgta-taggtcacagctatataa-ctaacatgctttctctgaacatattgtggtttcaa-cacctccagGATTTCTAACATATGCGGTAGCAACCTTAGTAGTCGTGGCAGCACTAGTTCTCTTCTTTGAACCTCGATATGGTCAGACAAATATCATGATATATCTGGG
|| ||||| ||  || || |  |||  ||    | |  |    ||||  |    || |||   | ||||    |||  || ||| || | ||    |||| |||||| |||||| |||  || | ||  || | |||| ||| ||||| |||||||||||||||||||| |||||||| || ||| |||||||||||||
gtgagtcattgcaacccagtcttgcg-catgacagttcgctggagctgcaggttctcacagaatctctc----catcctggggtgtcgatcattggcagGGTTTCTAGCATATGTGGTGACAGCATTGTTACTTGTGGGAGCGCTAGTACTCTTCTTTGAACCTCGATACGGTCAGACTAACATCCTGATATATCTGGG

upper sequence: LOC_Os06g50180.1 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 4
----------------------gttagtcactgacacacatttctgcaacactgtataggtcacagctatataactaacatgctttctctgaacatattgtggtttcaacacctccagGATTTCTAACATATGCGGTAGCAACCTTAGTAGTCGTGGCAGCACTAGTTCTCTTCTTTGAACCTCGATATGGTCAGACAAATATCATGATATATCTGGG
                       |||      |    ||  || |    |||  |||  ||   ||  | ||||||||  ||||||   ||    | || |  | |  ||| |      |||||||| |||||  | ||| || |||   |  ||    ||  |  |  | |  ||||||||||||||||| |||||||||||  || | ||  ||||
gttccgggtttagacatttctttttatcttaagttctactcttttttttcaccttattagttgaag--aaataactaa--tgcttttgttgcttttctttttctgttgacagC------ATTTCTAATATATGTAGCAGCTACATTATCCGCAGTATTGGCTTTGATCTTGTATTTTGAACCTCGATATGGACAGACAAATATACTGGTTTACTTGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagctatataactaacatgctttctctgaacatattgtggtttcaacacctccagGATTTCTAACATATGCGGTAGCAACCTTAGTAGTCGTGGCAGCACTAGTTCTCTTCTTTGAACCTCGATATGGTCAGACAAATATCATGATATATCTGGG
         aactaac  putative branch site (score: 1)
                                              cacctcc  putative PPT
     atataactaa  TA-rich tract