1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttggactttaatgatacagtaataactgaaacaacatcagattgattattgcccattacatgttggttctgactatcttgcctcctgattgctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCTAGAAAGGGGAAAAGGGCCGCGAATGGAACATCTACGGGGTTGCAGTCAC
species | Oryza sativa |
transcript | LOC_Os06g50050.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGAT AAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCTEST: gi|218492085|gb|FG945532.1|FG945532
genomic: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGATgtgagtattc ... gctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCT
EST: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGAT AAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCTEST: gi|87022119|gb|CI259191.1|CI259191
genomic: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGATgtgagtattc ... gctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCT
EST: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGAT AAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCTEST: gi|29621240|gb|CB626251.1|CB626251
genomic: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGATgtgagtattc ... gctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCT
EST: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGAT AAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCTEST: gi|109712956|gb|CI105564.1|CI105564
genomic: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGATgtgagtattc ... gctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCT
EST: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGAT AAACCAAGACCCTTGAGGCAATCGGATCTGGA-AAAGCTTTATCAACGTCTEST: gi|88339866|gb|CI649123.1|CI649123
genomic: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGATgtgagtattc ... gctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCT
EST: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGAT AAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCTEST: gi|218482446|gb|FG948949.1|FG948949
genomic: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGATgtgagtattc ... gctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCT
EST: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGAT AAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCT
genomic: ACCCTATCAGGGAGCTGTTGAACAATGAGAAAGATGGGCGAAAAGCAGATgtgagtattc ... gctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCT
ttattgcccattacatgttggttctgactatcttgcctcctgattgctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCTAGAAAGGGGAAAAGGGCCGCGAATGGAACATCTACGGGGTTGCAGTCAC
attacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggactttaatgatacagtaataactgaaacaacatcagattgattattgcccattacatgttggttctgactatcttgcctcctgattgctggttcagAAACCAAGACCCTTGAGGCAATCGGATCTGGAGAAAGCTTTATCAACGTCTAGAAAGGGGAAAAGGGCCGCGAATGGAACATCTACGGGGTTGCAGTCAC
- - - - - -tgataca
- - - - - - - - - - - - - - -aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttg