1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgcctatggaagcaaaattgttggtcatgtactcatgtcttctttgagcaagccttccatcagacattatcacctcatgttggaagaacatatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAATAGTGGCTGAGAAGGAAGGTATAGCTGAAGGGTACCGTGTCGTCATAA
species | Oryza sativa |
transcript | LOC_Os06g45660.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|218505045|gb|FG968801.1|FG968801
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|88572461|gb|CI664032.1|CI664032
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGEST: gi|38477525|gb|CF961658.1|CF961658
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCG
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|33815382|gb|CF333545.1|CF333545
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: GTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|58596640|gb|CK007168.1|CK007168
genomic: GTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|33689071|gb|CF317310.1|CF317310
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|33822248|gb|CF336938.1|CF336938
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|38475488|gb|CF959621.1|CF959621
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|38475613|gb|CF959746.1|CF959746
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|88334078|gb|CI641129.1|CI641129
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGEST: gi|33689070|gb|CF317309.1|CF317309
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCG
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|88283761|gb|CI405207.1|CI405207
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|25797786|gb|CA753747.1|CA753747
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGGATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|55414604|gb|CV726980.1|CV726980
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|55414535|gb|CV726911.1|CV726911
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|38481086|gb|CF965175.1|CF965175
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|163925430|gb|EG713343.1|EG713343
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|88382349|gb|CI633207.1|CI633207
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCEST: gi|5004087|gb|AU069236.1|AU069236
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGC
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|33657720|gb|CF280334.1|CF280334
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|88345287|gb|CI655747.1|CI655747
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATAEST: gi|33689232|gb|CF317471.1|CF317471
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|88376801|gb|CI639126.1|CI639126
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATEST: gi|2317371|gb|C22425.1|C22425
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAAT
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|33823879|gb|CF337751.1|CF337751
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|33656833|gb|CF279447.1|CF279447
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|88380875|gb|CI634900.1|CI634900
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATEST: gi|88238598|gb|CI238447.1|CI238447
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCAT
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|88992474|gb|CI035594.1|CI035594
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|11442620|gb|BF430523.1|BF430523
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|55435458|gb|CV730859.1|CV730859
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|33815380|gb|CF333544.1|CF333544
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|33659581|gb|CF282194.1|CF282194
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|112785873|gb|EE591589.1|EE591589
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAEST: gi|87004366|gb|CI298898.1|CI298898
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
EST: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAG GCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
genomic: ATGTTCTAGTCATCCCAAAGATAAGAGATGGGTTGACTGGACTAGACAAGgtatggaatg ... atatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAA
tgagcaagccttccatcagacattatcacctcatgttggaagaacatatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAATAGTGGCTGAGAAGGAAGGTATAGCTGAAGGGTACCGTGTCGTCATAA
tattttt CT-rich tract
aagaacatattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcctatggaagcaaaattgttggtcatgtactcatgtcttctttgagcaagccttccatcagacattatcacctcatgttggaagaacatatttttagGCTGAACCAAGGCATGTCGAAATTCTGGGCTATCTTCTATACGCCGCGAAAATAGTGGCTGAGAAGGAAGGTATAGCTGAAGGGTACCGTGTCGTCATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
ctgccta
- - - - -gaagcaa
- - - - - - - - -attgttg
- - - - - - - - - - - - - catgtac
- - - - - - - - - - - - - - - - - catgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttg