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gtgagacaaatgtaataatcggacatttattaggctgatatgaggactttatgctgactacatgaccttttttcctttctacactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGTGGTGTTTCAGTCCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGC
species | Oryza sativa |
transcript | LOC_Os06g45120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAG CGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGTEST: gi|58597715|gb|CK008243.1|CK008243
genomic: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAGgtgagacaaa ... cactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGT
EST: CAGTTGACTTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAG CGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGTEST: gi|29656411|gb|CB652686.1|CB652686
genomic: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAGgtgagacaaa ... cactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGT
EST: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAG CGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGTEST: gi|29620942|gb|CB625953.1|CB625953
genomic: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAGgtgagacaaa ... cactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGT
EST: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAG CGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGTEST: gi|29634503|gb|CB639512.1|CB639512
genomic: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAGgtgagacaaa ... cactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGT
EST: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAG CGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGTEST: gi|88256210|gb|CI358598.1|CI358598
genomic: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAGgtgagacaaa ... cactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGT
EST: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAG CGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGT
genomic: CAGTTGAATTGGGACCTGGTATCCTTGGAAATATCTTTGATGGAATCCAGgtgagacaaa ... cactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGT
gatatgaggactttatgctgactacatgaccttttttcctttctacactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGTGGTGTTTCAGTCCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGC
tgctgac putative branch site (score: 108)
ccttttttcctttcta putative PPT
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagacaaatgtaataatcggacatttattaggctgatatgaggactttatgctgactacatgaccttttttcctttctacactttgcagCGCCCTCTAAAAACTATTGCTATAAAGTCTGGAGATGTGTACATACCACGTGGTGTTTCAGTCCCTGCTCTTGACAAAGATCAGTTGTGGGATTTTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA