1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atttctctatagtaatctaaaaatttctagattgacaattcccatcagtttcagaattaagtcctaacatgtaacactttctttttttgcatggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTTTGCATTCACTCGCTGGGTTGGGATTGACGAAAATGAGGACGACAATGA
species | Oryza sativa |
transcript | LOC_Os06g40720.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACTGCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTEST: gi|88489943|gb|CI427215.1|CI427215
genomic: GACTGCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTGgtaagtcgct ... atggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGT
EST: GACTGCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTEST: gi|86845310|gb|CI340402.1|CI340402
genomic: GACTGCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTGgtaagtcgct ... atggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGT
EST: GGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTEST: gi|88536379|gb|CI466126.1|CI466126
genomic: GGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTGgtaagtcgct ... atggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGT
EST: GAAAAGATTTG AGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTEST: gi|88548670|gb|CI476488.1|CI476488
genomic: GAAAAGATTTGgtaagtcgct ... atggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGT
EST: GACTGCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTEST: gi|88474552|gb|CI411823.1|CI411823
genomic: GACTGCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTGgtaagtcgct ... atggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGT
EST: GTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTEST: gi|88518053|gb|CI445707.1|CI445707
genomic: GTATAGCCATGAAAAGATTTGgtaagtcgct ... atggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGT
EST: TCTGGGCGTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTEST: gi|33693015|gb|CF321254.1|CF321254
genomic: TCTGGGCGTATAGCCATGAAAAGATTTGgtaagtcgct ... atggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGT
EST: GACTGCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTG AGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTEST: gi|88459412|gb|CI519473.1|CI519473
genomic: GACTGCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTGgtaagtcgct ... atggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGT
EST: GCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATNAGAAGATTTG AGGGAAATGGACTGGGACAAGGATGGAATGGTGACCTTCAAAGAATTTCTG
genomic: GCAACAGGGGAACGCTCTTCTGGGCGTATAGCCATGAAAAGATTTGgtaagtcgct ... atggcaccagA-GGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTG
cagtttcagaattaagtcctaacatgtaacactttctttttttgcatggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTTTGCATTCACTCGCTGGGTTGGGATTGACGAAAATGAGGACGACAATGA
ctttctttttttgcat CT-rich tract
tttcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttctctatagtaatctaaaaatttctagattgacaattcccatcagtttcagaattaagtcctaacatgtaacactttctttttttgcatggcaccagAGGAAATGGACTGGGACAAGAATGGAATGGTGACCTTCAAAGAATTTCTGTTTGCATTCACTCGCTGGGTTGGGATTGACGAAAATGAGGACGACAATGA
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