1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtatctcgctaagtcagttgtttaaacttcaaatgctgatcaatgggccttcatcagtttgatgtttgcatataatattgccagCTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTGTATCATGAAGACCCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATG
species | Oryza sativa |
transcript | LOC_Os06g37160.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAG CTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTATTAAAGTCTTGEST: gi|58670643|gb|CK059329.1|CK059329
genomic: AAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAGgtgagtatct ... atattgccagCTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTG
EST: AAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAG CTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTGEST: gi|58598602|gb|CK009130.1|CK009130
genomic: AAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAGgtgagtatct ... atattgccagCTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTG
EST: GCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAG CTCAAGGATGACAGAGGCTTATATCAACAATCACTTAAGTTTTAAAGTCTTEST: gi|58664351|gb|CK053037.1|CK053037
genomic: GCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAGgtgagtatct ... atattgccagCTCAAGGATGACA-AGTATTATATCAACAATCACTTAAGTTTTAAAGTCTT
EST: AAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAG CTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTGEST: gi|58668256|gb|CK056942.1|CK056942
genomic: AAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAGgtgagtatct ... atattgccagCTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTG
EST: AAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAG CTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTG
genomic: AAGGAAGCCAAACACCAAGCTTTGAGCATGGTTACCGAGTTGGTTATAAGgtgagtatct ... atattgccagCTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTG
caaatgctgatcaatgggccttcatcagtttgatgtttgcatataatattgccagCTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTGTATCATGAAGACCCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATG
tttgcatataatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatctcgctaagtcagttgtttaaacttcaaatgctgatcaatgggccttcatcagtttgatgtttgcatataatattgccagCTCAAGGATGACAAGTATTATATCAACAATCACTTAAGTTTTAAAGTCTTGTATCATGAAGACCCAAACTCTCCTGATGCTCGTATTGTTGGCTTCCATG
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